Locus 2690

Sequence ID 2L_DroMel_CAF1
Location 7,516,985 – 7,517,077
Length 92
Max. P 0.997281
window4279 window4280

overview

Window 9

Location 7,516,985 – 7,517,077
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 89.78
Mean single sequence MFE -23.52
Consensus MFE -15.79
Energy contribution -17.07
Covariance contribution 1.28
Combinations/Pair 1.09
Mean z-score -2.41
Structure conservation index 0.67
SVM decision value 0.06
SVM RNA-class probability 0.562035
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7516985 92 + 22407834
UUGGCUUAGGUUAAGUCUCACAGCCAUUUGCCACCAGAGGGUGACCUAAGCCAACUCAUGACCUAACCCAAGCUCGUACACAAGUAAACCAU
(((((((((((((..((((...((.....)).....)))).)))))))))))))...((((.((......)).))))............... ( -24.70)
>DroSec_CAF1 19252 92 + 1
UUGGCUUAGGUUAAGUCUCAUAGCCAUUCGCCACCAGAGGGUGACCUAAGCCAACUCAUGACCUAACCCAAGCUCGUAUACAAGUAAACCAU
(((((((((((((..((((...((.....)).....)))).)))))))))))))...((((.((......)).))))............... ( -24.80)
>DroSim_CAF1 22444 92 + 1
UUGGCUUAGGUUAAGUCUCAUAGCCAUUCGCCACCAGAGGGUGACCUAAGCCAACUCAUGACCUAACCCAAGCUCGUACACAAGUAAACCAU
(((((((((((((..((((...((.....)).....)))).)))))))))))))...((((.((......)).))))............... ( -24.80)
>DroEre_CAF1 18146 92 + 1
CUCGCUUAGGAUAAGUAUCACAUCCAUUUGCUACCAAGGGAUGACCUAAGCCAACCCAUGACCUAACCCAAGCUCGCAGGCAAGUAAACCAU
...(((((((((....))).(((((.((((....)))))))))..))))))...((..(((.((......)).)))..))............ ( -17.90)
>DroYak_CAF1 18804 92 + 1
UUGGCUUGGGAUAAGUAUCACAUCCAUUGGCCAGCAAAGGAUGACCUAAGCCAACCCAUGACCUAACCCAAGCUCGUGUACAAGUAAACCAU
((((((((((((....))).(((((.(((.....))).)))))..)))))))))..(((((.((......)).))))).............. ( -25.40)
>consensus
UUGGCUUAGGUUAAGUCUCACAGCCAUUCGCCACCAGAGGGUGACCUAAGCCAACUCAUGACCUAACCCAAGCUCGUACACAAGUAAACCAU
.((((((((((((..((((.................)))).))))))))))))....((((.((......)).))))............... (-15.79 = -17.07 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 7,516,985 – 7,517,077
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 89.78
Mean single sequence MFE -32.92
Consensus MFE -26.86
Energy contribution -27.54
Covariance contribution 0.68
Combinations/Pair 1.12
Mean z-score -2.85
Structure conservation index 0.82
SVM decision value 2.83
SVM RNA-class probability 0.997281
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7516985 92 - 22407834
AUGGUUUACUUGUGUACGAGCUUGGGUUAGGUCAUGAGUUGGCUUAGGUCACCCUCUGGUGGCAAAUGGCUGUGAGACUUAACCUAAGCCAA
......(((....))).(.((((((((((((((......(((((...((((((....))))))....)))))...))))))))))))))).. ( -34.70)
>DroSec_CAF1 19252 92 - 1
AUGGUUUACUUGUAUACGAGCUUGGGUUAGGUCAUGAGUUGGCUUAGGUCACCCUCUGGUGGCGAAUGGCUAUGAGACUUAACCUAAGCCAA
.................(.((((((((((((((......(((((...((((((....))))))....)))))...))))))))))))))).. ( -34.80)
>DroSim_CAF1 22444 92 - 1
AUGGUUUACUUGUGUACGAGCUUGGGUUAGGUCAUGAGUUGGCUUAGGUCACCCUCUGGUGGCGAAUGGCUAUGAGACUUAACCUAAGCCAA
......(((....))).(.((((((((((((((......(((((...((((((....))))))....)))))...))))))))))))))).. ( -34.90)
>DroEre_CAF1 18146 92 - 1
AUGGUUUACUUGCCUGCGAGCUUGGGUUAGGUCAUGGGUUGGCUUAGGUCAUCCCUUGGUAGCAAAUGGAUGUGAUACUUAUCCUAAGCGAG
..(((......))).....(((((((.(((((((.(((.((((....)))).))).))...(((......)))...))))).)))))))... ( -27.80)
>DroYak_CAF1 18804 92 - 1
AUGGUUUACUUGUACACGAGCUUGGGUUAGGUCAUGGGUUGGCUUAGGUCAUCCUUUGCUGGCCAAUGGAUGUGAUACUUAUCCCAAGCCAA
.................(.(((((((.((((((((.(((..((..(((....)))..))..))).)))........))))).)))))))).. ( -32.40)
>consensus
AUGGUUUACUUGUAUACGAGCUUGGGUUAGGUCAUGAGUUGGCUUAGGUCACCCUCUGGUGGCAAAUGGCUGUGAGACUUAACCUAAGCCAA
...................((((((((((((((.((((....)))).((((((....))))))............))))))))))))))... (-26.86 = -27.54 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:48 2006