Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,511,453 – 7,511,569 |
Length | 116 |
Max. P | 0.606659 |
Location | 7,511,453 – 7,511,569 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -17.76 |
Energy contribution | -18.36 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.08 |
Mean z-score | -1.88 |
Structure conservation index | 0.75 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606659 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7511453 116 - 22407834 UCGAAGAUCAUUAGCAUGCCAACAAGAAAAUAAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGCUGAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC .....(((((((..(.((....)).)..)))...(......)............)))).((((((((((((...((.(((..(((....)))..))).))...)).)))))))))) ( -25.20) >DroSec_CAF1 13672 114 - 1 UCGAAGAUCAUUAGCAUGCCAACGAGAAA--AAAGGAAGAACCAAAGAGAACAAGAUCAGGGAACAGAGCUUAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC .....((((....(....)..........--...((.....))...........)))).((((((((((((((.((.(((..(((....)))..))).)).)))).)))))))))) ( -29.30) >DroSim_CAF1 16821 115 - 1 UCGAAGAUCAUUAACAUGCCAACGAGAAAA-AAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGCUAAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC .....((((.........((..........-...)).....(......).....)))).((((((((((((.(.((.(((..(((....)))..))).)).).)).)))))))))) ( -23.92) >DroEre_CAF1 12488 114 - 1 UCGAAGAUCAUUAGCAUGCCAACAAGAAA--AAAGGAGGAACAAAAGAGAACAAGAUCAGGGAACCCUGGUAAAAUGGUUAACAGGUAACUGGAAGUGAUAUAAGACUUUGUUUCC .(((((.((.(((.(((((((........--...(......).............((((((....))))))....))))...(((....)))...)))...))))))))))..... ( -19.60) >DroYak_CAF1 13072 115 - 1 UCGAAGAACAUUAGCAUGCCAACAAGAAAA-AAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGGUAAAUUGGCUGACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC ..............................-............................((((((((((......(.(((..(((....)))..))).).......)))))))))) ( -19.82) >consensus UCGAAGAUCAUUAGCAUGCCAACAAGAAAA_AAAGGAAGAACAAAAGAGAACAAGAUCAGGGAACAGAGCUAAAAUGGCUAACAGGUAACUGGGAGUGAUAUAAGACUUUGUUUCC .....((((.......((....))..........(......)............)))).((((((((((.....((.(((..(((....)))..))).))......)))))))))) (-17.76 = -18.36 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:46 2006