Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,501,653 – 7,501,758 |
Length | 105 |
Max. P | 0.984100 |
Location | 7,501,653 – 7,501,758 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.74 |
Mean single sequence MFE | -21.57 |
Consensus MFE | -11.29 |
Energy contribution | -12.60 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.20 |
Mean z-score | -2.54 |
Structure conservation index | 0.52 |
SVM decision value | 1.96 |
SVM RNA-class probability | 0.984100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7501653 105 + 22407834 UCAAAAAUCCC--AAUCUUAUGCCU---CCAUAAAUCCAAGUAUUGCAGACAAUGCCACCUAAUCCUUGGC---GGAAAUAAAUAUAA-UUUUCCCUUGCCAUUCUCUGCGAGU ...........--....(((((...---.))))).........(((((((.(((((((.........))))---(((((.........-.)))))......))).))))))).. ( -17.90) >DroPse_CAF1 8040 108 + 1 UGAAAUAUCUCUAAAUUUAAGGCCCCUACCACAAAUCCUUUUGUGGG----AUUUCUG--UAUUCUUAAACAGAGAAAGAACAUCUGCUGUUUCUUAAGCUCUUUUCUGCCUGG ...................((((.....(((((((....))))))).----.((((((--(........))))))).((((.....(((........)))....)))))))).. ( -24.40) >DroSec_CAF1 3954 105 + 1 UCAAAAGUCCC--AAUCUUAUACCU---CCAUAAAUGCAAGUAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAAAUAA-UUUUCCCUAGCCAUUCUCUGCGAGU ...........--............---...............(((((((.((((.((((........)))---(((((.........-.)))))...).)))).))))))).. ( -20.90) >DroSim_CAF1 6164 105 + 1 UCAAAAAUCCA--AAUCUUAUACCU---CCAUAAAUCCAAGUAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAUAUAA-UUUUCCCUAGCCAUUCUCUGCGAGU ...........--............---...............(((((((.((((.((((........)))---(((((.........-.)))))...).)))).))))))).. ( -20.90) >DroEre_CAF1 2675 91 + 1 UCAAAAAUG-------------------CCAUAAAUCCAAGCAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAUAUAA-GUUUCCCUAGCCAUUCUCUGCGAGU ((...((((-------------------(...........)))))(((((.((((.((((........)))---((((((........-))))))...).)))).))))))).. ( -23.50) >DroYak_CAF1 3068 105 + 1 UCAAAAAUCCC--AAUCUUGUGCCA---CCAUAAAUCCAAGCAUUGCAGACAAUGCCGCCUAAUCCUUGGC---GGAAAUAAAUAUAA-UUUUCCCUAGCCAUUCUCUGCGAGU ...........--....(((((...---.))))).........(((((((.((((.((((........)))---(((((.........-.)))))...).)))).))))))).. ( -21.80) >consensus UCAAAAAUCCC__AAUCUUAUGCCU___CCAUAAAUCCAAGUAUUGCAGACAAUGCCGCCUAAUCCUUGGC___GGAAAUAAAUAUAA_UUUUCCCUAGCCAUUCUCUGCGAGU ...........................................(((((((.((((.((((........)))...(((((...........)))))...).)))).))))))).. (-11.29 = -12.60 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:39 2006