Locus 2683

Sequence ID 2L_DroMel_CAF1
Location 7,501,459 – 7,501,557
Length 98
Max. P 0.581208
window4269

overview

Window 9

Location 7,501,459 – 7,501,557
Length 98
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -30.67
Consensus MFE -25.20
Energy contribution -24.90
Covariance contribution -0.30
Combinations/Pair 1.29
Mean z-score -1.12
Structure conservation index 0.82
SVM decision value 0.10
SVM RNA-class probability 0.581208
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7501459 98 + 22407834
ACUGUCGUGGGGUGAGUGUGGCUGGGGCACGCGCUCCUCACUCGCAUUACUGCCGCGAUGGUGGUUCUGUAA-G-UA--GAAAAAAAAAAUGGAUUAUAAAU
((((((((((((((((((.(...(((((....)))))...).))).))))).))))))))))..(((((...-.-))--))).................... ( -32.10)
>DroGri_CAF1 2961 88 + 1
GCCAUCGUGCGGUGAAUGUGGCUGUGGCACACGCUCCUCACUCGCAUUGCUGCCGCGAUGAUG---CUGCAACA-AGGA--GAG--AAAAUC------AAAU
((((((((((((((((((((..((.(((....)))...))..)))))).).))))).))))))---..))....-....--...--......------.... ( -25.50)
>DroSec_CAF1 3710 96 + 1
GCUGUCGUGGGGUGAGUGUGGUUGGGGCACGCGCUCCUCACUCGCAUUACUGCCGCGAUGGUGGUUCUGUAA-G-UG--GAAAA--GAAAUCGAUUAUAAAU
(((((((((((((((.((((((.(((((....)))))..)).))))))))).))))))))))..((((....-.-.)--)))..--................ ( -32.10)
>DroSim_CAF1 5920 96 + 1
GCUAUCGUGGGGUGAGUGUGGCUGUGGCACGCGCUCCUCACUCGCAUUACUGCCGCGAUGGUGGUUCUGUAA-G-AA--GAAAA--GAAAUCGAUUAUAAAU
((((((((((((.(((((((((....)).))))))))))....(((....))))))))))))..((((....-.-.)--)))..--................ ( -32.00)
>DroYak_CAF1 2876 96 + 1
GCUGUCGUGGGGCGAGUGUGGCUGUGGCACGCGCUCCUCACUCGCAUUACUGCCGCGAUGGUGGUUCUGCAA-G-UA--GAGAG--GAAAUCGAUUCUAAAU
.((.((((((((..((((((((....)).))))))))))))..(((..((..((.....))..))..)))..-.-..--)).))--................ ( -33.40)
>DroAna_CAF1 3874 91 + 1
GCUGUCGUGGGGCGAAUGUGGCUGGGGUACACGCUCCUCACUAGCGUUGCUUCCGCGAUGGUGGUUCUGUAA-AGCA--CAAAA----A----AUAAUACAA
(((((((((((((.(((((...(((((........)))))...))))))).))))))))))).((.((....-)).)--)....----.----......... ( -28.90)
>consensus
GCUGUCGUGGGGUGAGUGUGGCUGGGGCACGCGCUCCUCACUCGCAUUACUGCCGCGAUGGUGGUUCUGUAA_G_UA__GAAAA__GAAAUCGAUUAUAAAU
((((((((((((.(((((((((....)).))))))))))....(((....))))))))))))........................................ (-25.20 = -24.90 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:38 2006