Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,498,469 – 7,498,581 |
Length | 112 |
Max. P | 0.648223 |
Location | 7,498,469 – 7,498,581 |
---|---|
Length | 112 |
Sequences | 3 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 99.40 |
Mean single sequence MFE | -24.83 |
Consensus MFE | -24.40 |
Energy contribution | -24.73 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.98 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7498469 112 + 22407834 AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCAUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG .(..(..((..(..((...(((((((..((((((((.((((.((((.(....).)))))))).))))))))))))))).....((((......))))))..)..))..)..) ( -25.10) >DroSim_CAF1 21299 112 + 1 AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCAUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG .(..(..((..(..((...(((((((..((((((((.((((.((((.(....).)))))))).))))))))))))))).....((((......))))))..)..))..)..) ( -25.10) >DroEre_CAF1 21492 112 + 1 AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCUUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG .(..(..((..(..((...(((((((..(((((((..((((.((((.(....).))))))))..)))))))))))))).....((((......))))))..)..))..)..) ( -24.30) >consensus AUUGGUUUUUGUUUCAUUUGUGAUUAUUAUCAUAAUAUAUCGAUAUCGAUCUCUGUGUGAUGCAUUGUGAUUGAUCGCUUUCUACUUAGGUUAAAGUUGGGAUGGGUUCUGG .(..(..((..(..((...(((((((..((((((((.((((.((((.(....).)))))))).))))))))))))))).....((((......))))))..)..))..)..) (-24.40 = -24.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:37 2006