Locus 2681

Sequence ID 2L_DroMel_CAF1
Location 7,498,008 – 7,498,115
Length 107
Max. P 0.948964
window4267

overview

Window 7

Location 7,498,008 – 7,498,115
Length 107
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 90.59
Mean single sequence MFE -25.05
Consensus MFE -22.11
Energy contribution -21.80
Covariance contribution -0.31
Combinations/Pair 1.10
Mean z-score -2.07
Structure conservation index 0.88
SVM decision value 1.39
SVM RNA-class probability 0.948964
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7498008 107 + 22407834
UUUGUCGGUUAUUGGUAUUUCAGUAAUCGAUUAGAAAAUAAAAUAGUCAUAAU-----UAAUUUCGACAGAUCC------GU--AUGUGGAUCGAGAAUUAUACAUCGCUCCUACAUAUA
(((((((((((((((....)))))))))(((((..........))))).....-----.......))))))...------((--(((((((.(((..........))).))).)))))). ( -27.50)
>DroSim_CAF1 20836 109 + 1
UUUGUCGGUUAUUGGUAUUUCAGUAAUCGAUUAGAAAAUAAAAUAGUCAUAAU-----UAAUUUCGACAGAUCC------GUGGAUGUGGAUCGAGAAUUAUACAUCGCUCCUACACAUA
(((((((((((((((....)))))))))(((((..........))))).....-----.......))))))...------(((.....(((.(((..........))).)))..)))... ( -25.00)
>DroEre_CAF1 21015 118 + 1
UUUGUCGGUUAUUGGUAUAUCAGUAAUCGAUUAGAAAAUAAAAUGAUCAUAAUUUUCAUAAUUUCGACAGAUCCGUAUCCGU--AUGUGGAUCGAGAAUUAUACAUCGCUCCUACACAUA
...((((((((((((....)))))))))))).............(((.(((((((((............(((((((((....--))))))))))))))))))..)))............. ( -23.20)
>DroYak_CAF1 21267 112 + 1
UUUGUCGGUUAUUGGUAUUUCAGUAAUCGAUUAGAACAUAAAAUAGUCAUAAUUUUCAUAAUUUCGAUAGAUCC------GU--AUAUGGAUCGAGAAUUAUACAUCGCUCCUACACAUA
...((((((((((((....))))))))))))..............((.(((((((((...((....)).(((((------(.--...)))))))))))))))))................ ( -24.50)
>consensus
UUUGUCGGUUAUUGGUAUUUCAGUAAUCGAUUAGAAAAUAAAAUAGUCAUAAU_____UAAUUUCGACAGAUCC______GU__AUGUGGAUCGAGAAUUAUACAUCGCUCCUACACAUA
(((((((((((((((....)))))))))(((((..........))))).................))))))..............((((((.(((..........))).))).))).... (-22.11 = -21.80 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:36 2006