Locus 2680

Sequence ID 2L_DroMel_CAF1
Location 7,497,485 – 7,497,605
Length 120
Max. P 0.902260
window4266

overview

Window 6

Location 7,497,485 – 7,497,605
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 94.50
Mean single sequence MFE -35.69
Consensus MFE -30.14
Energy contribution -30.94
Covariance contribution 0.80
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.84
SVM decision value 1.02
SVM RNA-class probability 0.902260
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7497485 120 - 22407834
GACACUUUUUUAAUCACUUAGACCUUUUCUGGGGAUGUGCGUGUCUUAUGGGGGCGGUCAGCACUUAUUGGUCGACCGGCUACAUUUUGUUAGCUGAUCCAUUAGCUGAAAACCCCUAAU
(((((.......(((.((((((.....)))))))))....)))))...(((((((((((.((.(.....))).)))))...........((((((((....))))))))...)))))).. ( -38.50)
>DroSec_CAF1 20047 120 - 1
GACACUUUUUUAAUCACUCCGACCUUUUCUGGGGACGUGCGUGUCUUAUGGGGGCGGUCAGCACUUAUUGGUCGACCGGCCACAUUUUGUUAGCUGAUCCAUUAGCUGAAAACCCCUAAU
(((((.........((((((..((......))))).))).)))))...(((((((((((.((.(.....))).)))))...........((((((((....))))))))...)))))).. ( -36.40)
>DroSim_CAF1 20270 120 - 1
GACACUUUUUUAAUCACUUAGACCUUUUCUGGGGACGUGCGUGUCUUAUGGGGGCGGUCAGCACUUAUUGGUCGACCGGCUACAUUUUGUUAGCUGAUCCAUUAGCUGAAAACCCCUAAU
(((((........((.((((((.....)))))))).....)))))...(((((((((((.((.(.....))).)))))...........((((((((....))))))))...)))))).. ( -36.12)
>DroEre_CAF1 20397 119 - 1
AACACUUU-UUAAUCACUUAGACGUUUUCUAGGGAUGUGCGUGUCUUAUGGGGGCGGUCAGUACUUAUUGGUCGACCGGCUACAUUUUGUUAGCUGAUCCAUUAGCUGAAAACCCCUAAU
.((((...-...(((.((((((.....)))))))))....))))....(((((((((((.(.(((....)))))))))...........((((((((....))))))))...)))))).. ( -35.20)
>DroYak_CAF1 20697 120 - 1
AGCACUUUUUUAAUCACUUGCACAUUUUCUGGGGACGUGCGUGUCUUAUGGGGGCGGUCAGCACUUAUUGGUCGACCGGCUACAUUUUGUUAGCUGAUCCAUUAGCAGCAAACCCCUCAU
.(((..............))).........((((...(((.((.((.(((((((((..(((......)))..)).))(((((........)))))..))))).)))))))..)))).... ( -32.24)
>consensus
GACACUUUUUUAAUCACUUAGACCUUUUCUGGGGACGUGCGUGUCUUAUGGGGGCGGUCAGCACUUAUUGGUCGACCGGCUACAUUUUGUUAGCUGAUCCAUUAGCUGAAAACCCCUAAU
(((((........((.((((((.....)))))))).....)))))...(((((((((((.(.(((....)))))))))...........((((((((....))))))))...)))))).. (-30.14 = -30.94 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:35 2006