Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 767,003 – 767,093 |
Length | 90 |
Max. P | 0.832245 |
Location | 767,003 – 767,093 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 76.72 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -16.50 |
Energy contribution | -18.87 |
Covariance contribution | 2.36 |
Combinations/Pair | 1.33 |
Mean z-score | -1.68 |
Structure conservation index | 0.61 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 767003 90 - 22407834 CAUAUUUGGUUUAGCUAAUGCCUUUUGUCAGCUCGGCUCAUCUCUGGCUGGAGCAUUACGCAUACGCCGCGUGAGCGACGGAAAACUUUU---- .......(((((.((((((((......(((((.(((.......)))))))).)))))).))...((.(((....))).))..)))))...---- ( -25.80) >DroSec_CAF1 28750 90 - 1 CAUAUUGGGUUUAGCUAAUGCCUUUUGUCAGCUGGGCUCAUCUCUGGCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC---- .....(((((((((((.((.......)).))))))))))).......(((((((.((((((.......))))))))))))).........---- ( -34.10) >DroSim_CAF1 32144 90 - 1 CAUAUUGGGCUUAGCUAAUGCCUUUUGUCAGCUCGGCUCAUCUCUGGCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC---- .....((((((.((((.((.......)).)))).)))))).......(((((((.((((((.......))))))))))))).........---- ( -33.40) >DroEre_CAF1 28981 89 - 1 CACACUGGGUUUAGCUAGUUCCUUUCCUCAGCUGUGCUCAUCUCUGUCUGGCGCAUUACGCAUACGCCGCGUGAGCA-CGGAAAACUUUC---- .....(((((.(((((((........)).))))).)))))..(((((..((((...........))))((....)))-))))........---- ( -24.40) >DroWil_CAF1 26473 84 - 1 CUUAAUUAUUUUAGAUGGUUCGACUUGG------CGCUCAUCUCAAAGUGAACUUUUUCUUA----GCGCGUUUGCUUUUGAAAAGUUUUCAGC .....((((((((((((((.(......)------.)).))))).)))))))(((((((...(----(((....))))...)))))))....... ( -16.00) >DroYak_CAF1 32256 90 - 1 CAUAUUGGGUUUAGCUAAUUCCUUUUGUCAGCCGUGCUCAUCUCUGCCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC---- .....(((((...(((.((.......)).)))...))))).......(((((((.((((((.......))))))))))))).........---- ( -28.20) >consensus CAUAUUGGGUUUAGCUAAUGCCUUUUGUCAGCUGGGCUCAUCUCUGGCUGGCGCAUUACGCAUACGCCGCGUGAGCGCCGGAAAACUUUC____ .....(((((..((((.((.......)).))))..))))).......(((((((.((((((.......)))))))))))))............. (-16.50 = -18.87 + 2.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:36 2006