Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,497,210 – 7,497,330 |
Length | 120 |
Max. P | 0.637757 |
Location | 7,497,210 – 7,497,330 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.17 |
Mean single sequence MFE | -47.58 |
Consensus MFE | -39.14 |
Energy contribution | -39.82 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.10 |
Mean z-score | -1.39 |
Structure conservation index | 0.82 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.637757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7497210 120 + 22407834 GGCAUGCAGCUCUCGGCUGACUCCAUCAGCUUGGCCAGGGCCUCCUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGAAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG ..(((((((.(((......(((((((((..((((....(((.((((((((......((((((((....))))).))))))))))).....))).))))..))).)))))))))))))))) ( -50.40) >DroSec_CAF1 19773 120 + 1 GGAAUGCAGCCCUCGGCUGUCUCCAUCAGCUUGGCCAGGGCUUCCUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGGAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG ...((((((.......(((.((((((((..((((....(((.((.(((((.((...((((((((....))))).))))).))))).))..))).))))..))).)))))))).)))))). ( -46.80) >DroSim_CAF1 19999 119 + 1 GGAAUGCAGCCCUCGGCUGUCUCCAUCAGCUUGGCCAGGGCUU-CUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGGAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG ...((((((.......(((.((((((((..((((....(((.(-((((((.((...((((((((....))))).))))).))))).))..))).))))..))).)))))))).)))))). ( -46.20) >DroEre_CAF1 20124 120 + 1 GGAAUGCAUACCUCGGCUGUUUCCAUCAGCUUGGCCAGGGCUGCCUUCUCGUCAAAGGCUCGCACCAAUGCGGCGCCGAGGAGGACGAUUGCCACCAGAGUGAUUGGAGUGGACUGCAUG ...(((((..((.((((.(((.....((((((.....))))))(((((((......((((((((....))))).))))))))))..))).))).((((.....)))).).))..))))). ( -39.50) >DroYak_CAF1 20419 120 + 1 GCAAGGCAGCUCUCGGCUGCCUCCAUCAGCUUGGCCAUUGCUUCCUUCUCGUCAAAGGCUCGCACCAUGGCGACGCCGAGAAGGACGAUGGCCACCAGAACGAUUGGAGUAGACUGCAUG (((.((((((.....))))))((((((..(((((((((((..((((((((......(((((((......)))).))))))))))))))))))))..))...)).))))......)))... ( -55.00) >consensus GGAAUGCAGCCCUCGGCUGUCUCCAUCAGCUUGGCCAGGGCUUCCUUCUCGUCAAAGGCUCGCACCAGUGCGGCGCCGAGGAGGACGAUUGCCACCAGAAUGAUUGGAGUAGACUGCAUG ...((((((.......(((.((((((((..((((....(((.((((((((......((((((((....))))).))))))))))).....))).))))..))).)))))))).)))))). (-39.14 = -39.82 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:34 2006