Locus 2677

Sequence ID 2L_DroMel_CAF1
Location 7,495,755 – 7,495,875
Length 120
Max. P 0.728626
window4261

overview

Window 1

Location 7,495,755 – 7,495,875
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 89.44
Mean single sequence MFE -31.58
Consensus MFE -25.36
Energy contribution -25.68
Covariance contribution 0.31
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.80
SVM decision value 0.42
SVM RNA-class probability 0.728626
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7495755 120 + 22407834
CGCACACACGCACAGGCAGCCAGGAUGCGCUGCCGACUGCGCAGUCGACGUCGCUGCCAACGAUGACUAAUACGUUAUCCUUGCUCUAACCACUUUUUCUUCACUUUACUUUCCCCUCUC
.........(((..((((((...((((((((((.......)))).)).))))))))))...((((((......))))))..))).................................... ( -30.10)
>DroSec_CAF1 18501 120 + 1
CGCACACCCGCACAGGCAGCCAGGAUGCGCUGCCGACUGCGCAGUCGACGUCGCUGCCAGCGAUGACUAAUACGUUAUCCUUGCUCUGUCCACUUUUUCUUCACUUUAUUCUCCCCUCUC
.(.(((...(((..(((((((.....).))))))(.(((.((((.((....))))))))))((((((......))))))..)))..))).)............................. ( -31.30)
>DroEre_CAF1 18832 119 + 1
CACACACACACACGAGCGGCCAGGAUGCGCUGUCGACUGCGCAGUCGACGUCGCUGCCAGCGAUGACUAAUCCGUUAUCCUUGCUCCGUCCACUUUUUCUUCACUUUACUUUAAACUCU-
.............(((.((...(((.(((.((((((((....)))))))).))).((.((.((((((......)))))))).)))))..)).)))........................- ( -32.80)
>DroYak_CAF1 18968 119 + 1
CGCACAUACACACGAGCAGCCAGGAUGCGCUGCCGACUGCGCAGUCGACGUCGCUGCCAGCGAUGACUAAUACGUUAUCCUUGCUCGGUUCACUUUUUCUUCACU-UAUUUCCACCUCAC
............((((((...((((((((....(((((....))))).((((((.....)))))).......)).))))))))))))..................-.............. ( -32.10)
>consensus
CGCACACACACACAAGCAGCCAGGAUGCGCUGCCGACUGCGCAGUCGACGUCGCUGCCAGCGAUGACUAAUACGUUAUCCUUGCUCUGUCCACUUUUUCUUCACUUUACUUUCACCUCUC
.............(((((...((((((((....(((((....))))).((((((.....)))))).......)).))))))))))).................................. (-25.36 = -25.68 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:29 2006