Locus 2675

Sequence ID 2L_DroMel_CAF1
Location 7,493,999 – 7,494,115
Length 116
Max. P 0.663247
window4258

overview

Window 8

Location 7,493,999 – 7,494,115
Length 116
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.21
Mean single sequence MFE -29.66
Consensus MFE -23.48
Energy contribution -23.68
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.74
Structure conservation index 0.79
SVM decision value 0.27
SVM RNA-class probability 0.663247
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7493999 116 - 22407834
GAGUGAGAGUCGAAGCCAAAUUGAUAAGCAAUUGCUGACUUACAGCUACAAUCAACAG----GCCGACAGGCAAUCAAACCAUAAUAAGCAACUGUCGACAGAUAGAUAGGCUCCACGCC
..(((.(((((...(((.(((((.....)))))((((.....))))...........)----))((((((((................))..))))))...........))))))))... ( -29.69)
>DroSec_CAF1 16767 115 - 1
GAGUGAGAGUCGAAGCCAAAUUGAUAAGCAAUUGCCGACUUACAGCUGCAAUCAACAG----GCCGACAGGCAAUCAAACCAUAAUAAGCAACUGUCGACAGAUAGAUA-GCUCCACGCC
..(((.((((((..((..(((((.....)))))))))))))..(((((..........----(((....)))....................(((((....))))).))-))).)))... ( -26.20)
>DroSim_CAF1 16832 115 - 1
GAGUGAGAGUCGAAGCCAAAUUGAUAAGCAAUUGCCGACUUACAGCUGCAAUCAACAG----GCCGACAGGCAAUCAAACCAUAAUAAGCAACUGUCGACAGAUAGAUA-GCUCCACGCC
..(((.((((((..((..(((((.....)))))))))))))..(((((..........----(((....)))....................(((((....))))).))-))).)))... ( -26.20)
>DroEre_CAF1 16959 115 - 1
GAGUGAGAGUCGAAGCCAAAAUGAUAAGCAAUUGCCAACUUACAGCUGCAAUCAACCG----GCCGACAGGCAAUCAAGCCAUAAUAAGCAACUGUCGACAGAUAGAUA-GCUCCACGCC
..(((.((((((..(((....((((..(((.(((........))).))).))))...)----)))))).(((......))).......((..(((((....)))))...-)))))))... ( -28.00)
>DroYak_CAF1 17201 119 - 1
GAGUGAGAGUCGAAGCCAAAAUGAUAAGCAAUUGCCGACUUGCAGCUGCAAUCAACCGGAUUGCCGACAGGCAAUCAAACCAUAAUAAGCAACUGUCGACAGAUAGAUG-GCUCCACGCC
..(((.((((((..((.....((((..(((.((((......)))).))).))))....(((((((....)))))))............))..(((((....))))).))-)))))))... ( -38.20)
>consensus
GAGUGAGAGUCGAAGCCAAAUUGAUAAGCAAUUGCCGACUUACAGCUGCAAUCAACAG____GCCGACAGGCAAUCAAACCAUAAUAAGCAACUGUCGACAGAUAGAUA_GCUCCACGCC
..(((.((((....((.....((((..(((.(((........))).))).))))........(((....)))................))..(((((....)))))....)))))))... (-23.48 = -23.68 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:26 2006