Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,491,150 – 7,491,244 |
Length | 94 |
Max. P | 0.807960 |
Location | 7,491,150 – 7,491,244 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -17.39 |
Energy contribution | -16.95 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.91 |
Structure conservation index | 0.72 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.807960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7491150 94 - 22407834 ACAGUGCCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGACAUUCAAAAAAA-------------AAAGUGUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU ...((..((.((....)).))..))..(((((((((..(((((........-------------..))))).....(((......)))......))))))))).... ( -19.90) >DroSec_CAF1 13896 92 - 1 AAAGUGCCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGGCAUUCAAAAAAA---------------AAAGUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCUAUUU ...((((((.((....)).)).((.(((((((....)))))))))......---------------...))))...((((((((..(((.....)))..)))))))) ( -23.30) >DroEre_CAF1 13980 107 - 1 AAAGUACCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGACAUUCAAAAAACGUACGUAUGUACAUGUACGUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU ...(((.((.((....)).)).)))..((((((((((((..........((((((((......)))))))).....(((......))).)))..))))))))).... ( -28.10) >DroYak_CAF1 14296 91 - 1 AAAGUACCGUUAGAACUAUCGGUGCAGUGCCAGCUCUGACAUUCAAAAAACGUA----------------UCUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU ...((((((.((....)).))))))..(((((((((((.....)).........----------------......(((......)))......))))))))).... ( -25.10) >consensus AAAGUACCGUUAGAACUAUCGAUGCAGUGCCAGCUCUGACAUUCAAAAAAA_______________AA_GUAUAAUAGGUAGCUUCCUCUCAAUGAGUUGGCAAUUU ....((((....((....))(((((((.(....).))).))))..................................))))(((..(((.....)))..)))..... (-17.39 = -16.95 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:25 2006