Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,485,785 – 7,485,899 |
Length | 114 |
Max. P | 0.612817 |
Location | 7,485,785 – 7,485,899 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 66.31 |
Mean single sequence MFE | -26.24 |
Consensus MFE | -10.37 |
Energy contribution | -11.48 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.18 |
Mean z-score | -1.78 |
Structure conservation index | 0.40 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7485785 114 + 22407834 UACUCGCUUAUCAAUUGAAAUUGCAGCAAGGCGGCAGAUGCCUUCAUUUAUAUCUGCUACAUAUUUCUUACAAAGAGUAGUAGUAUGCACGUAGUAGUAGAGAAAUGCGGGAAA ..(((((...((...((((...((......))(((....)))))))......((((((((.....(((.....)))(((......))).....))))))))))...)))))... ( -28.00) >DroSec_CAF1 8571 113 + 1 UCCUCGCUUAUCAAUUGAAAUUGCUGCAAGGCGGCAGAUGCCAUUAUUUAUAUCUGCUACAUAUUUCUUAUAAAAAGUAGUA-UGUGUACGUAGUAGUCGAGAAAUGCGGGAAA (((.(((.......((((...((((((...((((((((((..........))))))))(((((((.(((.....))).))))-)))))..)))))).)))).....)))))).. ( -31.80) >DroSim_CAF1 8621 113 + 1 UCCUCGCUUAUCAAUUGAAAUUGCUGCAAGGCGGCAGAUGCUAUCAUUUAUAUCUGCUACAUAUUUCUUAUAAAAAAUAUUA-UGUGUACGUAGUAGUCGGGAAAUGCGGGAAA (((.(((...((...(((...((((((.....((((((((.((.....))))))))))((((((....(((.....)))..)-)))))..)))))).))).))...)))))).. ( -28.30) >DroEre_CAF1 8556 93 + 1 UCCUCGCUUAUCAAUUGAAAUUGCAACAAGGCGGCAGAUGCCUCCAUUUAUAUCUGGUGUCUAUACCC------GG--------------GCAGUA-UGGAGAAAUGCGGGGAA (((((((.......((.(.(((((.....((.(((....))).))........((((.((....))))------))--------------))))).-).)).....))))))). ( -29.80) >DroMoj_CAF1 10256 87 + 1 CAAUCGCCAAUCAAUUUAAAUUGCAACAAUGCAGCCG---CCUU--------------------UUCAUAUAAAAAG-AUCU-UGAG--CCGCUUAAAUGAGCGAUACAAUAGA ..(((((...(((.(((((..((((....))))((.(---((((--------------------((......)))))-....-...)--).)))))))))))))))........ ( -13.31) >consensus UCCUCGCUUAUCAAUUGAAAUUGCAGCAAGGCGGCAGAUGCCUUCAUUUAUAUCUGCUACAUAUUUCUUAUAAAAAGUAGUA_UGUG_ACGUAGUAGUCGAGAAAUGCGGGAAA ..(((((...((..........((......))((((((((..........)))))))).........................................)).....)))))... (-10.37 = -11.48 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:21 2006