| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,484,922 – 7,485,019 |
| Length | 97 |
| Max. P | 0.869287 |
| Location | 7,484,922 – 7,485,019 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 92.78 |
| Mean single sequence MFE | -20.85 |
| Consensus MFE | -20.96 |
| Energy contribution | -20.77 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.53 |
| Structure conservation index | 1.01 |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.869287 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7484922 97 + 22407834 CGUCAGCUAAAAAAAAAAGAGCUACAGGUAAAAAGUACACCUACGGCUAUGCGACAAGUGCAUGGGCAUUGCGCAAAAAGGCAAACUCAUCAGCGAU .(((.(((...........((((..((((.........))))..)))).((((...(((((....))))).))))................)))))) ( -21.10) >DroSec_CAF1 7737 97 + 1 CCUCAGCUAAAAAAAAAAGAGCUACAGGUAAAAAGUACACCUACGGCUAUGCGACAAGUGCAUGGGCAUUGCGCAAAAAGGCAAACUCAUCAGCGAU .....(((...........((((..((((.........))))..)))).((((...(((((....))))).))))....)))............... ( -20.80) >DroSim_CAF1 7746 97 + 1 GCUCAGCUAAAAAAAAACGAGCUACAGGUAAAAAGUACACCUACGGCUAUGCGACAAGUGCAUGGGCAUUGCGCAAAAAGGCAAACUCAUCAGCGAU .....(((...........((((..((((.........))))..)))).((((...(((((....))))).))))....)))............... ( -20.80) >DroEre_CAF1 7718 88 + 1 CCUCAGCUAAAAA---AAAGGCUACAGGUAAAAAGUACACCUACGGCUAUGCGACAAGUGCAUGGGCAUUGCGCAAAAAGGCAAACUCAUC------ .....(((.....---...((((..((((.........))))..)))).((((...(((((....))))).))))....))).........------ ( -20.70) >consensus CCUCAGCUAAAAAAAAAAGAGCUACAGGUAAAAAGUACACCUACGGCUAUGCGACAAGUGCAUGGGCAUUGCGCAAAAAGGCAAACUCAUCAGCGAU .....(((...........((((..((((.........))))..)))).((((...(((((....))))).))))....)))............... (-20.96 = -20.77 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:20 2006