Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,484,765 – 7,484,858 |
Length | 93 |
Max. P | 0.687034 |
Location | 7,484,765 – 7,484,858 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 74.42 |
Mean single sequence MFE | -32.95 |
Consensus MFE | -20.46 |
Energy contribution | -22.55 |
Covariance contribution | 2.09 |
Combinations/Pair | 1.28 |
Mean z-score | -1.34 |
Structure conservation index | 0.62 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687034 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7484765 93 + 22407834 --------------GCCACUUUUGGGCUCGAGCUUGGGGGAA-AGCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC --------------((((....((((((((....(((..((.-....))..)))...))))))))((((.(((.....)))(((((...)))))...))))...)))) ( -34.20) >DroPse_CAF1 8049 97 + 1 CAUGGGACAUGUGCGCCACUUUG---------UGUGGGGGAAAGGCAAUCUUCAUUGUAAGCCCAGGUCUGAGGUCUCU--CGACUCUCGCCUCUCUUGGCUCUUGGC ....((((.......((((....---------.))))(((....(((((....)))))...)))..))))((((((...--.))).)))(((......)))....... ( -29.00) >DroSec_CAF1 7580 93 + 1 --------------GCCACUUUUGGGCUCGAGCUUGGGGGAA-AUCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC --------------((((....((((((((....(((..((.-....))..)))...))))))))((((.(((.....)))(((((...)))))...))))...)))) ( -34.20) >DroSim_CAF1 7589 93 + 1 --------------GCCACUUUUGGGCUCGAGCUUGGGGGAA-AGCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC --------------((((....((((((((....(((..((.-....))..)))...))))))))((((.(((.....)))(((((...)))))...))))...)))) ( -34.20) >DroEre_CAF1 7563 91 + 1 --------------GCCACUUUUGGGCUCGAGC-UGGGGGAA-AGCAUU-UCCAUUGUGAGCUCAGGCUCGGGCCUUUUCCUGGGGCUCCUCCAUUUCGCCUCUUGGC --------------((((.....((((((((((-(..(((..-.(((..-.....)))...))).)))))))))))......(((((...........))))).)))) ( -37.00) >DroAna_CAF1 7693 87 + 1 -------------AGCCACUUUUGGGCCGGAGCUUGGGGGAA-AGCAUUUUCCAUUGUGAGCUCAGGUUCGGGCCUUUUUCCCCAACAA-------CAGCCUCUUGGC -------------.((((.....((((.(..(.(((((((((-((((........)))..((((......))))..)))))))))))..-------).))))..)))) ( -29.10) >consensus ______________GCCACUUUUGGGCUCGAGCUUGGGGGAA_AGCAUUUUCCAUUGUGAGCUCAGGCGCGGGCCUUUUCCUGGAGCUCCUCCAUUUCGCCUCUUGGC ..............((((.....(((((((.(((((((......(((........)))...))))))).)))))))......((((...))))...........)))) (-20.46 = -22.55 + 2.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:19 2006