Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,484,502 – 7,484,599 |
Length | 97 |
Max. P | 0.803410 |
Location | 7,484,502 – 7,484,599 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 88.28 |
Mean single sequence MFE | -20.80 |
Consensus MFE | -15.30 |
Energy contribution | -16.78 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.15 |
Mean z-score | -2.04 |
Structure conservation index | 0.74 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.803410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7484502 97 + 22407834 CAAAUUGAAGGCACUGCAGUUUGAAAAGUUCGACAUUUAAAGGUCGAGCUUUUUACU-UUAAAGGUUAU-AGCUAAUAAAAAUCCAUAACAUAUUGGCA ....((((((((...))....(((((((((((((........)))))))))))))))-)))).......-.(((((((.............))))))). ( -24.22) >DroSec_CAF1 7310 97 + 1 UAAACUGAAAACACUGCAGUUUGAAAAGUUCGACAUUAAAAGGUCGAGCUUUUUAGU-UUAAAGGUUAU-UGCUAAUAAAAAUCCAUAACAUAUUGGCA .........(((.((.....((((((((((((((........)))))))))))))).-....)))))..-((((((((.............)))))))) ( -24.22) >DroSim_CAF1 7322 97 + 1 UAAACUAAAAGCACUGCAGUUUGAAAAGUUCGACAUUUAAAGGUCGAGCUUUUUAGU-UUAAAGGUUAU-UGCUAAUAAAAAUCCAUAACAUAUUGGCA .........(((.((.....((((((((((((((........)))))))))))))).-....)))))..-((((((((.............)))))))) ( -24.22) >DroEre_CAF1 7320 98 + 1 CAGAUUGAAGGCACUGCAUUUUGCAAAGGCCGACAUUUAAAGGUC-AGCUGUUUAGUUUUAAAGGUUAAAACCUAAUAAAAAUCCAUAAAAUAUUGGCA .(((((((((((..(((.....)))...)))(((........)))-.....))))))))...((((....)))).........(((........))).. ( -17.90) >DroYak_CAF1 7385 98 + 1 UAAAUUGAAAGCACUGCAGUUUGCAAAGUCAGACAUUUAAAGGUCGAGUUUUUUAGUUUUAAAGGUUAU-ACCCAAUAGAAAUCCAUAAGAUAUUGGCA .((((((((((.(((((.....)).......(((........))).)))))))))))))..........-..((((((.............)))))).. ( -13.42) >consensus UAAAUUGAAAGCACUGCAGUUUGAAAAGUUCGACAUUUAAAGGUCGAGCUUUUUAGU_UUAAAGGUUAU_AGCUAAUAAAAAUCCAUAACAUAUUGGCA .........(((.((.....((((((((((((((........))))))))))))))......)))))....(((((((.............))))))). (-15.30 = -16.78 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:18 2006