Locus 2668

Sequence ID 2L_DroMel_CAF1
Location 7,472,098 – 7,472,217
Length 119
Max. P 0.825638
window4249

overview

Window 9

Location 7,472,098 – 7,472,217
Length 119
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 91.84
Mean single sequence MFE -42.65
Consensus MFE -38.33
Energy contribution -38.58
Covariance contribution 0.25
Combinations/Pair 1.09
Mean z-score -1.46
Structure conservation index 0.90
SVM decision value 0.70
SVM RNA-class probability 0.825638
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7472098 119 - 22407834
GGCUAG-UUAGAAUUACAAGCGGACAUUGGGGUUCCGGGAGCGGACGAAGUUCAACAGCUCAUCGGAGUCCUCGCACACAAAUGGCUUGAUGUGAUGGCAGGCCACGUCGUGCCACUUGA
.(((.(-(.......)).))).......((((((((((((((.((......))....)))).)))))).)))).....(((.((((.(((((((.........))))))).)))).))). ( -39.60)
>DroSec_CAF1 67881 119 - 1
GGCUAG-UUAGAAUUACAAGCGGACAUUGGGAUUCCGGGAGCGGACGAAGUUCAACAGCUCGUCGGAGUCCUCGCACACGAAUGGCUUGAUGUGAUGACAGGCCACGUCGUGCCACUUGA
......-.........((((.((.....((((((((((((((.((......))....)))).))))))))))....(((((.(((((((.........)))))))..))))))).)))). ( -43.80)
>DroSim_CAF1 70538 119 - 1
GGCUAG-UUAGAAUUACAAGCGGACAUUGGGAUUCCGGGAGCGGACGAAGUUCAGCAGCUCGUCGGAGUCCUCGCACACGAAUGGCUUGAUGUGAUGGCAGGCCACGUCGUGCCACUUGA
......-.........((((.((.....((((((((((((((.((......))....)))).))))))))))....(((((.(((((((.........)))))))..))))))).)))). ( -44.00)
>DroWil_CAF1 115636 115 - 1
GG-UAU-UU---AUUACAAGCGCACAUUUGGAUUCCGGGAACGGACAAAGUUCAACAGCUCGUCGGAGUCCUCGCAGACGAAGGGCUUGAUGUGGUGACAGGCCACGUCGUGCCAUUUAA
((-(((-..---.....((((.(......((((((((.((((.......)))).((.....))))))))))(((....))).).))))((((((((.....)))))))))))))...... ( -38.80)
>DroYak_CAF1 70800 119 - 1
GGCUAU-CUAGAAUUACAAGCGAACAUUGGGAUUCCGGGAGCGGACGAAGUUCAGCAGCUCGUCGGAGUCCUCGCACACGAAUGGCUUGAUGUGAUGGCAGGCCACGUCGUGCCACUUGA
(((...-............((((......(((((((((((((.((......))....)))).)))))))))))))..((((.(((((((.........)))))))..)))))))...... ( -42.70)
>DroAna_CAF1 68700 120 - 1
AGCUAAUUUAGAAUUACAAGCGGACAUUGGGAUUCCGGGAGCGGACAAAGUUCAGCAGCUCGUCGGAGUCCUCGCAGACGAAUGGCUUGAUGUGGUGGCAUGCCACAUCGUGCCACUUGA
...................(((......((((((((((((((.((......))....)))).)))))))))))))...(((.((((.(((((((((.....))))))))).)))).))). ( -47.00)
>consensus
GGCUAG_UUAGAAUUACAAGCGGACAUUGGGAUUCCGGGAGCGGACGAAGUUCAACAGCUCGUCGGAGUCCUCGCACACGAAUGGCUUGAUGUGAUGGCAGGCCACGUCGUGCCACUUGA
...................(((......((((((((((((((.((......))....)))).)))))))))))))...(((.((((.(((((((.........))))))).)))).))). (-38.33 = -38.58 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:17 2006