| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,471,361 – 7,471,457 |
| Length | 96 |
| Max. P | 0.513833 |
| Location | 7,471,361 – 7,471,457 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.61 |
| Mean single sequence MFE | -14.21 |
| Consensus MFE | -8.33 |
| Energy contribution | -7.67 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.59 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.513833 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7471361 96 - 22407834 AUGACUUUUAAGAUGACUCAUAUUAAAUUUAAUUUUACCACAUUGCUGACUU-UAGAACUACUCAGUCAAAUCUAGAGUAGCCUAAACCACAAAGUU ..((((((((((((.................)))))).......((((.(((-(((((((....)))....))))))))))).........)))))) ( -12.33) >DroSec_CAF1 67158 93 - 1 AUGACUUU---GAUGCCUCAUAUUUAAUUUAAUGUUACCACAUUGCUGACUU-UAGAACUACUCAGUCAAAUCUAGAGUAGCCUAAACCCCAAAGUU ..((((((---(.................((((((....)))))).....((-(((..((((((((......)).)))))).)))))...))))))) ( -17.60) >DroEre_CAF1 70567 74 - 1 -----------------------UGAACUUAAUUUUACCACAUUGCUGUUUUACAGAACUACUCAGACAAAUCUAGAGUAGCCUAACCCCCAAGGUU -----------------------.............(((......(((.....)))..(((((((((....))).))))))............))). ( -12.70) >consensus AUGACUUU___GAUG_CUCAUAUUAAAUUUAAUUUUACCACAUUGCUGACUU_UAGAACUACUCAGUCAAAUCUAGAGUAGCCUAAACCCCAAAGUU .........................(((((...............(((.....)))..((((((((......)).))))))...........))))) ( -8.33 = -7.67 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:16 2006