Locus 2666

Sequence ID 2L_DroMel_CAF1
Location 7,471,223 – 7,471,321
Length 98
Max. P 0.529580
window4247

overview

Window 7

Location 7,471,223 – 7,471,321
Length 98
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 87.37
Mean single sequence MFE -25.68
Consensus MFE -19.33
Energy contribution -20.33
Covariance contribution 1.00
Combinations/Pair 1.11
Mean z-score -2.52
Structure conservation index 0.75
SVM decision value -0.01
SVM RNA-class probability 0.529580
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7471223 98 + 22407834
UGAUCAAAAUCAAUGCAAAGCAUUUCCAAUCAGUGAUUUUGCAUAAAA---CCCAUCGAGUCAUCCAAGCGGAAAUGAAACAGGUGGGGCAAA---------------UCAGAUUC
.((((.......((((((((((((.......)))).))))))))....---((((((...((((((....)))..)))....)))))).....---------------...)))). ( -25.00)
>DroSec_CAF1 67021 97 + 1
UGAUCAA-AUCAAUGCAAAGCAUUUCCAAUCAGUGAUUUUGCAUAAAA---CCCAUCGAGUCAUCCAAGCGGAAAUGAAACAGGUGGGGCAAA---------------UCAGAUCC
.((((..-....((((((((((((.......)))).))))))))....---((((((...((((((....)))..)))....)))))).....---------------...)))). ( -27.10)
>DroSim_CAF1 69662 98 + 1
UGAUCAAAAUCAAUGCAAAGCAUUUCCAAUCAGUGAUUUUGCAUAAAA---CCCAUCGAGUCAUCCAAGCGGAAAUGAAAUAGGUGGGGCAAA---------------UCAGAUCC
.((((.......((((((((((((.......)))).))))))))....---((((((...((((((....)))..)))....)))))).....---------------...)))). ( -27.10)
>DroEre_CAF1 70429 98 + 1
UGAUCAAAAUCAAUGCAAAGCAUUUCCAAUCAGUGAUUUUGCAUAAAA---CCCAUCGACUCAUCCAAGCGGAAAUGACACGGGUGGGGCAAA---------------UCAGAUCC
.((((.......((((((((((((.......)))).))))))))....---((((((...((((((....)))..)))....)))))).....---------------...)))). ( -24.90)
>DroYak_CAF1 69916 98 + 1
UGAUCAAAAUCAAUGCAAAGCAUUUCCAAUCACUGAUUUCGCAUAAAA---CCCAUCGACUCAUCCAAGCGGAAAUGAAACGGGUGGGGCAAA---------------UCAGAUCC
.((((......(((((...))))).........((((((.((......---(((((((..((((((....)))..)))..).)))))))))))---------------))))))). ( -21.30)
>DroAna_CAF1 67717 116 + 1
UGAUCAAAAUCGGUGCAAAGCAUUUCCAAUCACUGAUUUUGGAUAAAAAGGCAGUGCGACUCAUCCAAGCGGAAAUGGAAUGGGUGGGGCGAAAAAUCGAAUUCUGAUUCAGAAUC
...((((((((((((...............))))))))))))...........((.(.(((((((((........))).)))))).).))..........((((((...)))))). ( -28.66)
>consensus
UGAUCAAAAUCAAUGCAAAGCAUUUCCAAUCAGUGAUUUUGCAUAAAA___CCCAUCGACUCAUCCAAGCGGAAAUGAAACAGGUGGGGCAAA_______________UCAGAUCC
.((((.......((((((((((((.......)))).)))))))).......((((((...((((((....)))..)))....)))))).......................)))). (-19.33 = -20.33 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:15 2006