| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,468,785 – 7,468,887 |
| Length | 102 |
| Max. P | 0.902355 |
| Location | 7,468,785 – 7,468,887 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 93.96 |
| Mean single sequence MFE | -28.15 |
| Consensus MFE | -21.66 |
| Energy contribution | -21.50 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.77 |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.902355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7468785 102 + 22407834 GCGCAACAGCAGAC---GCAAACAUUCUAAUUAGCACUAAA----AAGAGACCUCGACGCCAUCAAAAG---CGAGUUAUCUAGAUACACAAAGGUGGGAUGUUGUUGCAAC ..(((((((((..(---........((((..((((......----..((....))..(((........)---)).))))..))))..(((....))))..)))))))))... ( -27.00) >DroSec_CAF1 64471 102 + 1 GCGCAACAGCAGAC---GCAAACAUUCUAAUUAGCACUAAA----AAGAGACCUCGACGCCAUCAAAAG---CGAGUUAUCUAGAUACACAAAGGUGGGAUGUUGUUGCAAC ..(((((((((..(---........((((..((((......----..((....))..(((........)---)).))))..))))..(((....))))..)))))))))... ( -27.00) >DroSim_CAF1 66786 102 + 1 GCGCAACAGCAGGC---GCAAACAUUCUAAUUAGCACUAAA----AAGAGACCUCGACGCCAUCAAAAG---CGAGUUAUCUAGAUACACAAAGGUGGGAUGUUGUUGCAAC ..(((((((((..(---........((((..((((......----..((....))..(((........)---)).))))..))))..(((....))))..)))))))))... ( -25.40) >DroEre_CAF1 67894 102 + 1 GCGCAACAGCAGAC---GCCAACAUUCUGAUUAGCACUAAA----AAGAGACCUCGAGGCCAUCAGAAG---CGAGUUAUCUAGAUGCACAAAGGUGGGAUGUUGUUGCAAC ..(((((((((..(---(((....(((((((..((.((...----..((....)).)))).)))))))(---((((....))...))).....))))...)))))))))... ( -30.90) >DroYak_CAF1 67427 112 + 1 GCGCAACAGCAGACGACGCAAACAUUCUAAUUAGCACUAAAAAAAAAGAGACCUCGACGCCAUCAAAAGCGGCGAGUUAUCUAGAUACACAAAGGUGGGAUGUUGUUGCAAC ..(((((((((..(.((((..............))...........(((...((((.(((........))).))))...)))............)).)..)))))))))... ( -30.44) >consensus GCGCAACAGCAGAC___GCAAACAUUCUAAUUAGCACUAAA____AAGAGACCUCGACGCCAUCAAAAG___CGAGUUAUCUAGAUACACAAAGGUGGGAUGUUGUUGCAAC ..(((((((((..(...........((((..((((............((....))((.....))...........))))..))))..(((....))))..)))))))))... (-21.66 = -21.50 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:14 2006