Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,468,200 – 7,468,302 |
Length | 102 |
Max. P | 0.536023 |
Location | 7,468,200 – 7,468,302 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 82.44 |
Mean single sequence MFE | -30.55 |
Consensus MFE | -18.40 |
Energy contribution | -18.18 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.25 |
Mean z-score | -2.01 |
Structure conservation index | 0.60 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.536023 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7468200 102 - 22407834 -AUAUCGAUAAAUAUUGACAGCGCGUCAAGUUGAAUU---AGGAGCAGGGAAUGGUGGUGGAUAGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCUAUCAU -...(((((.....(((((.....))))))))))...---...........((((((((.(((((((((((---((((.....))))).)))).)))))).)))))))) ( -28.30) >DroSec_CAF1 63878 103 - 1 CAUAUCGAUAAAUAUUGACAGCUCGUCAAGUUGAAUU---AGGAGCAGGGAAUGGUGGUGGAUAGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU ....(((((....)))))..((((.(.((......))---).)))).....(((((.((.(((((((((((---((((.....))))).)))).)))))).)).))))) ( -29.50) >DroSim_CAF1 66195 102 - 1 CAUAUCGAUAAAUAUUGACAGCGCGUCAAGUUGAAUU---C-GAGCAGGGAAUGGUGGUGGAUAGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU ....((((......(((((.....))))).......)---)-)).......(((((.((.(((((((((((---((((.....))))).)))).)))))).)).))))) ( -31.62) >DroEre_CAF1 67321 106 - 1 CAUAUCGAUAAAUAUUGACAGCGCGUCAGGUCGAAUU---AGGAGCUGGGAAUGGUGGUGGCCAGUGAGAGUGGAAUCAAGUGGAAUCUUCUCAGUUGUCAGCGACCAU ...............((((.....))))(((((....---.(.(((((((((.(((.....(((.(((........)))..))).)))))))))))).)...))))).. ( -28.80) >DroYak_CAF1 66820 101 - 1 --UAUCCAUAGAUACUGACAGCGCGUCAGCUUAAAUU---GGGUGCAGGGUAUGGCGGUGAUUGGUGAGAG---GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU --((((((...(..(((((.....)))))..)....)---)))))......((((((.((((...((((((---((((.....))))).)))))...)))).)).)))) ( -33.70) >DroAna_CAF1 64744 100 - 1 -AUAUCAAUAAAUAUUGACAGCGUGUCAGGUUCAUGGAAAGAAAGGGGGCAAUGGGGCUGG---GUGAGAG---GUUCCAAUGGAAUCUUCUCAGUUGUC--CAGCCAU -...(((((....)))))((...((((...(((.......)))....)))).)).((((((---(((((((---(((((...)))))).)))))....))--))))).. ( -31.40) >consensus _AUAUCGAUAAAUAUUGACAGCGCGUCAAGUUGAAUU___AGGAGCAGGGAAUGGUGGUGGAUAGUGAGAG___GUUCAAGUGGAAUCUUCUCAAUUGUCAGCGACCAU ..............(((((.....)))))......................((((((.(((....((((((...((((.....)))).))))))....))).)).)))) (-18.40 = -18.18 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:13 2006