Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,459,798 – 7,459,888 |
Length | 90 |
Max. P | 0.500000 |
Location | 7,459,798 – 7,459,888 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 79.46 |
Mean single sequence MFE | -21.16 |
Consensus MFE | -11.92 |
Energy contribution | -14.54 |
Covariance contribution | 2.62 |
Combinations/Pair | 1.05 |
Mean z-score | -1.90 |
Structure conservation index | 0.56 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7459798 90 + 22407834 AAAAGCGAUGAUAGCGAAUCCCCCACUAGAAUCCA------AGUCACGCAUCCCCAGACGCGCUGUCUUCACUCGCUGCAGGUAAAUAUUUACCUG ...(((((.((((((((.((........)).))..------......((.((....)).)))))))).....))))).(((((((....))))))) ( -23.00) >DroSec_CAF1 55906 89 + 1 AAAAGCGAUGAUAGCGAGUCCCCCACUAGAAUCCA------AGUCACGCAUC-CCAGACGCGCUGUCUCCACCUGCUGCAGGUAAUUAUUUACCUG ...((((..(((((((.(((...............------...........-...))).)))))))......)))).(((((((....))))))) ( -21.45) >DroSim_CAF1 57448 89 + 1 AAAAGCGAUGAUAGCGAGUCCCCGACUACAAUCCA------AGUCACGCAUC-CCAGACGCGCUGUCUCCACCUGCUGCAGGUAAAUAUUUACCUG ...((((..(((((((.(((...((((........------))))..(....-.).))).)))))))......)))).(((((((....))))))) ( -24.40) >DroYak_CAF1 57539 81 + 1 AAAAGCAAUUACAGUGAAUCUCCCACUGGAAUCCCCUUUCCCGUCACGC---------------AUCUCCACCAGCUGCAGGUAAAUAUUUACCUG ...(((.....(((((.......)))))(((......))).........---------------..........))).(((((((....))))))) ( -15.80) >consensus AAAAGCGAUGAUAGCGAAUCCCCCACUAGAAUCCA______AGUCACGCAUC_CCAGACGCGCUGUCUCCACCUGCUGCAGGUAAAUAUUUACCUG ...((((..(((((((.(((....................................))).)))))))......)))).(((((((....))))))) (-11.92 = -14.54 + 2.62)
Location | 7,459,798 – 7,459,888 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 79.46 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -21.14 |
Energy contribution | -21.57 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.43 |
Structure conservation index | 0.75 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7459798 90 - 22407834 CAGGUAAAUAUUUACCUGCAGCGAGUGAAGACAGCGCGUCUGGGGAUGCGUGACU------UGGAUUCUAGUGGGGGAUUCGCUAUCAUCGCUUUU (((((((....)))))))....((((((.((.((((((((....)))))......------.(((((((.....)))))))))).)).)))))).. ( -31.40) >DroSec_CAF1 55906 89 - 1 CAGGUAAAUAAUUACCUGCAGCAGGUGGAGACAGCGCGUCUGG-GAUGCGUGACU------UGGAUUCUAGUGGGGGACUCGCUAUCAUCGCUUUU (((((((....)))))))...((((((....).(((((((...-))))))).)))------))(((..((((((....).)))))..)))...... ( -30.60) >DroSim_CAF1 57448 89 - 1 CAGGUAAAUAUUUACCUGCAGCAGGUGGAGACAGCGCGUCUGG-GAUGCGUGACU------UGGAUUGUAGUCGGGGACUCGCUAUCAUCGCUUUU (((((((....)))))))...((((((....).(((((((...-))))))).)))------))(((.(((((.(....)..))))).)))...... ( -29.20) >DroYak_CAF1 57539 81 - 1 CAGGUAAAUAUUUACCUGCAGCUGGUGGAGAU---------------GCGUGACGGGAAAGGGGAUUCCAGUGGGAGAUUCACUGUAAUUGCUUUU ((.(((....((((((.......))))))..)---------------)).)).....(((((.((((.((((((.....)))))).)))).))))) ( -20.80) >consensus CAGGUAAAUAUUUACCUGCAGCAGGUGGAGACAGCGCGUCUGG_GAUGCGUGACU______UGGAUUCUAGUGGGGGACUCGCUAUCAUCGCUUUU (((((((....))))))).(((...........(((((((....)))))))............(((..(((((((...)))))))..))))))... (-21.14 = -21.57 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:33:06 2006