Locus 266

Sequence ID 2L_DroMel_CAF1
Location 754,417 – 754,519
Length 102
Max. P 0.814166
window425

overview

Window 5

Location 754,417 – 754,519
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 92.45
Mean single sequence MFE -27.25
Consensus MFE -24.67
Energy contribution -24.95
Covariance contribution 0.28
Combinations/Pair 1.11
Mean z-score -1.31
Structure conservation index 0.91
SVM decision value 0.66
SVM RNA-class probability 0.814166
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 754417 102 + 22407834
UAUUACUCAUCUCUGAUGUGGUGUCCUUUGCUCCUCCGUUUCUUCACACAUUUCUUCUCCGACAAUCAGUGUGAUCCUGGAGUGGGCGUGGAUCGCUUCUUC
.....(.((((...)))).)((((((..((((((((((.....((((((...................))))))...))))).))))).))).)))...... ( -27.61)
>DroSec_CAF1 15958 102 + 1
CAUUGCUCAUCUCUGAUGUGGUGUCCUUCGCUCCUCCGUUUCUUCACACAUUCCUGCUCCGACAAUCAGUGUGAUCCUGGAGUGGGCGUGGAUCGCUUCUUC
(((..((((....))).)..)))(((..((((((((((.....((((((...................))))))...))))).))))).))).......... ( -29.71)
>DroSim_CAF1 19408 102 + 1
CAUUGCUCAUCUCUGAUGUGGUGUCCUUUGCUCCUCCGUUUCUUCACACAUUCCUGCUCCGACAAUCAGUGUGAUCCUGGAGUGGGCGUGGAUCGCUUCUUC
(((..((((....))).)..)))(((..((((((((((.....((((((...................))))))...))))).))))).))).......... ( -27.91)
>DroEre_CAF1 16193 101 + 1
CAUUGCUCAUCUCUGAUGUGGUGUCCU-UGCUCCUCCAUUUCUCCGCCCAAUCCUGCUGCGACAUUCAGUGCGAUCCUGGAGUGGGCGUGGAUCGCUUCUUC
(((..((((....))).)..)))....-.((...((((......((((((.(((.....((.(((...))))).....))).))))))))))..))...... ( -27.10)
>DroYak_CAF1 19435 102 + 1
CAUUGCUCAUCUCUGAUGUGGUGUCCUUUGCUCCUCCAUUUCUUCACACUUUCCCGCUACGACAUUCAGUGCGAUCCCGGAGUGGGCGUGGAUCGCUUCUUC
(((..((((....))).)..)))(((..(((((((((......((.((((.................)))).))....)))).))))).))).......... ( -23.93)
>consensus
CAUUGCUCAUCUCUGAUGUGGUGUCCUUUGCUCCUCCGUUUCUUCACACAUUCCUGCUCCGACAAUCAGUGUGAUCCUGGAGUGGGCGUGGAUCGCUUCUUC
.....(.((((...)))).)((((((..((((((((((.....((((((...................))))))...))))).))))).))).)))...... (-24.67 = -24.95 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:35 2006