Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,431,505 – 7,431,607 |
Length | 102 |
Max. P | 0.514891 |
Location | 7,431,505 – 7,431,607 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -18.41 |
Consensus MFE | -14.37 |
Energy contribution | -14.70 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.58 |
Structure conservation index | 0.78 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.514891 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7431505 102 - 22407834 UAUCCUCACAUAAAAUACAUAAAUUUAAGUUUGCUAAGCUCUUGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCCAGCUUCCGCAAGGAGUACGC ...............(((..............(((..(((........((((((((.....)))))))).........))).))).(((....))))))... ( -16.33) >DroSec_CAF1 27310 85 - 1 UAUCUUUACAUAAAAUACAUUA-----------------UCUGGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCGAGCUUCCGCAAGGAGUACGC ......................-----------------..(((....((((((((.....)))))))).....)))..(((.(((.((....))))).))) ( -18.20) >DroSim_CAF1 28958 102 - 1 UAUCCUCACAUAAAAUACUUCAAUUUAAGUUUGCUAAAGUCUUGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCGAGCUUCCGCAAGGAGUACGC ...............(((.........((((((((..(((....))).((((((((.....)))))))).........))))))))(((....))))))... ( -20.70) >consensus UAUCCUCACAUAAAAUACAUAAAUUUAAGUUUGCUAA__UCUUGACUAAUUUGAAAAUGACUUUCAGAUGAAAACCACAGCGAGCUUCCGCAAGGAGUACGC ................................................((((((((.....))))))))..........(((.(((.((....))))).))) (-14.37 = -14.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:58 2006