| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,421,956 – 7,422,051 |
| Length | 95 |
| Max. P | 0.523000 |
| Location | 7,421,956 – 7,422,051 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 90.74 |
| Mean single sequence MFE | -29.80 |
| Consensus MFE | -26.02 |
| Energy contribution | -26.23 |
| Covariance contribution | 0.21 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.87 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.523000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7421956 95 + 22407834 AUAACCACGUGGUUGGAAGCAUGCCAGGGCAUGCUUUGCAGACGCCGACGACGAUGACGAAUUCUUGGCUCCGAAUUCUUGAUUUCAACGAUUUU .....(((((.(((((((((((((....)))))))))((....)))))).))).))..((((((........))))))................. ( -28.80) >DroSec_CAF1 16525 95 + 1 AUAACCACGUGGUUGGAAGCAUGCCAGGGCAUGCUUUGCGGACGCCGACGACGAUGACGAAUUCUUGGCUCCGAAUUCCUGAUUUCAACGAUUUU ........((.(((((((((((((....))))))))).((((.(((((.((((....))...)))))))))))............)))).))... ( -30.60) >DroSim_CAF1 18350 95 + 1 AUAACCACGUGGUUGGAAGCAUGCCAGGGCAUGCUUUGCGGACGCCGACGACGAUGACGAAUUCUUGGCUCCGAAUUCCUGAUUUCAACGAUUUU ........((.(((((((((((((....))))))))).((((.(((((.((((....))...)))))))))))............)))).))... ( -30.60) >DroEre_CAF1 19594 95 + 1 AUAACCACGUGGUUGGAAGCAUGCCCGGGCAUGCUUUGCGGACGCCGACGACGAUGACGAAUCCUUGGCUCCGAAUUCCUGAUUUCAACGAUUUU ........((.(((((((((((((....))))))))).((((.(((((.((((....))..)).)))))))))............)))).))... ( -31.60) >DroYak_CAF1 17905 95 + 1 AUAACCACGUGGUUGGAAGCAUGCCCGGGCAUGCUUUGCGGACGCCGACGACGAUGACGAAUCCUUGGCUCCGAAUUCCUGAUUUCAACGAUUUU ........((.(((((((((((((....))))))))).((((.(((((.((((....))..)).)))))))))............)))).))... ( -31.60) >DroAna_CAF1 17698 89 + 1 AUAGCACCUCGGUUGGAAGCAUGCCAGGGCAUGCUUUGCGGAUGCCGACGAC------GAGUCCUUGGAUAUGAAGUCCUGAUUUUAGAAAUUUU ...(((..((.((..(((((((((....))))))))))).))))).(((..(------(.(((....))).))..)))................. ( -25.60) >consensus AUAACCACGUGGUUGGAAGCAUGCCAGGGCAUGCUUUGCGGACGCCGACGACGAUGACGAAUCCUUGGCUCCGAAUUCCUGAUUUCAACGAUUUU .(((((....)))))(((((((((....))))))))).((((.(((((.((((....))..)).)))))))))...................... (-26.02 = -26.23 + 0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:52 2006