Locus 2652

Sequence ID 2L_DroMel_CAF1
Location 7,414,279 – 7,414,389
Length 110
Max. P 0.629587
window4221

overview

Window 1

Location 7,414,279 – 7,414,389
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.97
Mean single sequence MFE -31.82
Consensus MFE -20.69
Energy contribution -21.25
Covariance contribution 0.56
Combinations/Pair 1.17
Mean z-score -1.61
Structure conservation index 0.65
SVM decision value 0.20
SVM RNA-class probability 0.629587
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7414279 110 + 22407834
UACGU--CUG--------ACAGAUAUAUCAGCAUGGGCAAGUACAAGAUGAAGGUCUGGUAUCAAUCCCCUUAUCCGGACGAUGCUGCCCGCCUGCCCAAAAUGUAUAUCUGCGAAUUCU
.....--.((--------.((((((((.((...((((((.((...((((....))))((((((..(((........))).))))))....)).))))))...))))))))))))...... ( -31.00)
>DroVir_CAF1 6635 112 + 1
UCCAUUUUCG--------ACAGAUACAUCAGCAUGGGCAAGUACAAAAUGAAAGUGUGGUAUCAGUCGCCGUAUCCGGAUGAUGCCGCACGCCUGCCCAAGAUGUACAUCUGUGAGUUCU
......(((.--------(((((((((((....((((((.((.(.....)...(((((((((((....(((....))).))))))))))))).)))))).))))))..)))))))).... ( -42.80)
>DroGri_CAF1 8696 112 + 1
UCAUUCUUAC--------ACAGAUAUAUCAGCAUGGGCAAGUACAAAAUGAAGGUGUGGUAUCAGUCGCCCUAUCCAGAUGAUGCCGCCCGCCUGCCCAAGAUGUACAUCUGUGAGUUCU
.........(--------(((((((((((....((((((.((.(.....)..((.(((((((((.((..........))))))))))))))).)))))).))))))..))))))...... ( -37.60)
>DroWil_CAF1 9397 107 + 1
UU-----CUC--------CCAGAUACAUCAGCAUGGGUAAAUACAAAAUGAAGGUCUGGUAUCAAUCUCCAUAUCCCGAUGAUGCUGCCCGCCUACCCAAAAUGUAUAUAUGUGAGUUCU
..-----(((--------.((.((((((.....((((((....(.....)..(((..(((((((.((..........))))))))))))....))))))..))))))...)).))).... ( -22.20)
>DroMoj_CAF1 11421 107 + 1
UCCUU-------------GCAGAUACAUCAGCAUGGGCAAAUACAAAAUGAAGGUGUGGUAUCAGUCGCCCUAUCCAGAUGACGCCGCCCGCCUGCCCAAGAUGUACAUCUGUGAGUUCU
..((.-------------.((((((((((....((((((....(.....)..((.((((..(((.((..........)))))..))))))...)))))).))))))..))))..)).... ( -35.70)
>DroAna_CAF1 9105 117 + 1
-UUUC--AUGCUAAUCCCUUAGGUACAUCAGCAUGGGCAAGUACAAGAUGAAGGUAUGGUACCAAUCGCCCUAUCCGGAUGACGCCGCCCGCCUCCCCAAGAUGUAUAUCUGCGAGUUCU
-....--(((((...((....))......)))))((((..............((((.(((.......))).)))).((......))))))..(((....((((....))))..))).... ( -21.60)
>consensus
UCCUU__CUG________ACAGAUACAUCAGCAUGGGCAAGUACAAAAUGAAGGUGUGGUAUCAAUCGCCCUAUCCGGAUGAUGCCGCCCGCCUGCCCAAGAUGUACAUCUGUGAGUUCU
...................((((((((((....(((((.....(.....).((((.((((((((.((..........))))))))))...))))))))).))))))..))))........ (-20.69 = -21.25 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:51 2006