Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,411,584 – 7,411,704 |
Length | 120 |
Max. P | 0.564645 |
Location | 7,411,584 – 7,411,704 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -40.88 |
Consensus MFE | -36.78 |
Energy contribution | -36.74 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.20 |
Mean z-score | -1.14 |
Structure conservation index | 0.90 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.564645 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7411584 120 - 22407834 GGUAGGAUUAUUGUAUUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUAGCUCGUUUGCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGAUCGUUGACACCCAGCCAGUAGUU .....((((((((...(((((((((..((((.((((.....((((((..((..(((((((.........))...)))))..))))))))))))))))....))).)))))).)))))))) ( -33.20) >DroSec_CAF1 6077 120 - 1 GGUGGGAUUAUUGUACUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUGGCUCGCUUUCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGGUCGUUGACUCCCAGCCAGUAGUU ((((((.((((....(((((.(((......((((((((((...))))))))..))......))).)))))...)))).))))))(((((.(((..((..(....)..)).)))))))).. ( -43.70) >DroSim_CAF1 6303 120 - 1 GGUGGGAUUAUUGUACUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUGGCUCGUUUGCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGGUCGUUGACACCCAGCCAGUAGUU ((((((.((((....(((((.(((.....((.((((((((...)))))))).)).......))).)))))...)))).))))))(((((.(((..(((.(....))))..)))))))).. ( -44.50) >DroEre_CAF1 8561 120 - 1 GGUGGGAUUGUUAUACUUGGGCUCAUUUUUGCGCCACCUGAAGUAGGUGGCUAGUUUGCCGGAGGCCAAGGAUAUAAACUCCCCCUGUUUGGCCAAGUCAUUGACUCCCAGCCAGUAGUU ((.((((...((((((((((.(((......((((((((((...))))))))..))......))).)))))..)))))..))))))...(((((..((((...))))....)))))..... ( -43.00) >DroYak_CAF1 6604 120 - 1 GGUGGGAUUGUUAUACUUGGGUUCAUUUUUGCGCCACCUGAAGUAGGUGGCUCGUUUGCCGGAGGCCAGGGAUAUAAACUCGCCCUGUUUGGCCAGAUCGUUGACUCCCAGCCAGUAGUU (((((((..((((..(((((.(((.....((.((((((((...)))))))).)).......))).)))))........((.(((......))).)).....))))))))).))....... ( -40.00) >consensus GGUGGGAUUAUUGUACUUGGGUUCAUUUUUGCGCCACUUGAAGUAGGUGGCUCGUUUGCCGGAGGCCAAGGAUAUAAACUCGCCCUGCUUGGCCAGGUCGUUGACUCCCAGCCAGUAGUU ((((((.((((....(((((.(((......((((((((((...))))))))..))......))).)))))...)))).))))))(((((.(((..((((...))))....)))))))).. (-36.78 = -36.74 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:48 2006