Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 752,227 – 752,334 |
Length | 107 |
Max. P | 0.797893 |
Location | 752,227 – 752,334 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 80.04 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -12.66 |
Energy contribution | -11.97 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.18 |
Mean z-score | -2.99 |
Structure conservation index | 0.40 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797893 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 752227 107 + 22407834 GACUGCAAGUUGGUAAUCUUGAAACAAUUAUGCAUACGCGCGCAUACAGAGAAAAACGUUCGCCACAGAAAUCUGUGGCGCGUGAGACUCG--------ACAAAAAGUAGUCCAA ((((((...(((................(((((........)))))..(((....(((..((((((((....)))))))))))....))).--------.)))...))))))... ( -34.00) >DroPse_CAF1 15123 96 + 1 G---GCGGGUGGGUAAUCUCGAAACAAUUAUGCAUACGC--GCAUGCAGAAGGA--------------AAAUCUGUGGCGCGUGAUACUCGGAAAACAGAGAAAAAGUAGCCCAA .---..(((((((....)))..........(((.(((((--((.((((((....--------------...)))))))))))))...(((........))).....))))))).. ( -29.20) >DroSec_CAF1 13775 107 + 1 GACUGCAAGUUGGUAAUCUCGAAACAAUUAUGCAUACGCGCGCAUACAGAGAAAAACGUUCGCCACAGAAAUCUGUGGCGCGUGAGACUCG--------ACAAAAAGUAGUCCAA ((((((...(((....((((...........((....))((((.......(((.....)))(((((((....)))))))))))))))....--------.)))...))))))... ( -34.70) >DroSim_CAF1 17214 107 + 1 GACUGCAAGUUGGUAAUCUCGAAACAAUUAUGCAUACGCGCGCAUACAGAGAAAAACGUUCGCCACAGAAAUCUGUGGCGCGUGGGACUCG--------ACAAAAAGUAGUCCAA ...(((((((((............))))).))))..(((((.........(((.....)))(((((((....))))))))))))((((((.--------.......).))))).. ( -35.00) >DroAna_CAF1 15569 102 + 1 GACUGCAAGUCGGUAAUCUCGAAACAAUUAUGCAUACGC--GCAUACAGAGGGAAACGCU---CACUGAAAUCUGUGGCGCGUGAGACUCG--------ACAAAAAGUAGCCCAA .(((....(((((...((((....((....))...((((--((.((((((.(....).(.---....)...)))))))))))))))).)))--------))....)))....... ( -26.60) >DroPer_CAF1 17914 96 + 1 G---GGGUGUGGGUAAUCUCGAAACAAUUAUGCAUACGC--GCAUGCAGAAGGA--------------AAAUCUGUGGCGCGUGAUACUCGGAAAACAGAGAAAAAGUAGCCCAA .---((((.((((....)))).........(((.(((((--((.((((((....--------------...)))))))))))))...(((........))).....))))))).. ( -29.10) >consensus GACUGCAAGUUGGUAAUCUCGAAACAAUUAUGCAUACGC__GCAUACAGAGAAAAACGUU___CACAGAAAUCUGUGGCGCGUGAGACUCG________ACAAAAAGUAGCCCAA .......((((.(((((.........)))))...(((((..((.((((((.....................))))))))))))).)))).......................... (-12.66 = -11.97 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:34 2006