Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,411,344 – 7,411,464 |
Length | 120 |
Max. P | 0.636918 |
Location | 7,411,344 – 7,411,464 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.58 |
Mean single sequence MFE | -31.03 |
Consensus MFE | -26.56 |
Energy contribution | -26.24 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.16 |
Mean z-score | -1.29 |
Structure conservation index | 0.86 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.636918 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7411344 120 - 22407834 UUCGAUGUAGAAAUAUCUCGAUCCUAUCUGUUGAUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGUCUUCUGGAUGGCUGUCAACUGGUUUUCCGUCCUCUUCUGUCCAUC ...(.((((((.(((((.((........))..))))).)))))).).((((......)))).....((((((((.....((((..(((.......)))..)))).....))))))))... ( -30.10) >DroSec_CAF1 5837 120 - 1 UUCGAUGUAGAAAUACCUCGAUCCUAUCUGUUGGUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGACUUCUGGAUGGCUGUCAGCUGGCUUUCCGUUCUCUUCUGUCCAUC ...(.((((((.(((((.((........))..))))).)))))).).((((......)))).....((((((((.....((((.((((.......)))).)))).....))))))))... ( -34.10) >DroSim_CAF1 6063 120 - 1 UUCGAUGUAAAAAUACCUCGAUCCUAUCUGUUGGUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGUCCUCUGAAUGGCUGUCAGCUGGCUUUCCGUCCUCUUCUGUCCAUC .((((.(((....))).))))...((((.(..((...(((........)))...))..).))))..((((((((......(.((((..(((....)))...)))).)..))))))))... ( -25.90) >DroEre_CAF1 8321 120 - 1 UUCAAUGUAGAAGUACCUCGACCCUAUCUUUUGGUAUCUCUGCAGCACGAGUUUCCUCUCGAUCUCGGAUAGAGUCUUCUGAAUGGCUGUUAGCUGGCUUUCCGUCCUCUUCUGUCCAUC .....((((((..((((...............))))..))))))...((((......)))).....((((((((....(.(((.((((.......))))))).).....))))))))... ( -31.36) >DroYak_CAF1 6364 120 - 1 UUCGAUGUAGAAAUACCUCGAUCCUAUCUGUUGGUACCUCUGCAGCACGAGUUUUCUUUCGAUCUCGGAGAGAGUCUUCUGAAUGGCUGUCAACUGGCUUGCCGUGCUCUUCUGUCCAUC .((((.(((....))).))))..........(((.((....(.((((((((..(((((((.......)))))))..))).....(((.(((....)))..)))))))))....))))).. ( -33.70) >consensus UUCGAUGUAGAAAUACCUCGAUCCUAUCUGUUGGUAUCUCUGCAGCACGAGUUUCCUUUCGAUAUCGGAUAGAGUCUUCUGAAUGGCUGUCAGCUGGCUUUCCGUCCUCUUCUGUCCAUC .....((((((.(((((...............))))).))))))...((((......)))).....((((((((......(.((((..(((....)))...)))).)..))))))))... (-26.56 = -26.24 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:47 2006