Locus 2648

Sequence ID 2L_DroMel_CAF1
Location 7,410,977 – 7,411,097
Length 120
Max. P 0.903818
window4216

overview

Window 6

Location 7,410,977 – 7,411,097
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.75
Mean single sequence MFE -40.48
Consensus MFE -31.96
Energy contribution -33.60
Covariance contribution 1.64
Combinations/Pair 1.08
Mean z-score -1.95
Structure conservation index 0.79
SVM decision value 1.03
SVM RNA-class probability 0.903818
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7410977 120 + 22407834
UUUGUGCGCAUUUCUAUUGCUGUAUCCUUACGGAUCCCUGAUAGAAGCCCAGGAGGGCAGGCGCUAUGUGUGUCUAUUAUCAGAUCCUCCCAAUCAGUGCAGUGAAUAUUGCGUAUCCGC
...(((((((.(((.(((((.(((....)))(((((..((((((..((((....))))((((((.....)))))).)))))))))))...........))))))))...))))))).... ( -41.90)
>DroSec_CAF1 5470 120 + 1
UUUGUGCGCAUUUCUUUUGCUGUAUCCUUACGGAUCCCUGAUAGAAGCCCAGGAGGGCAGGCGCUAUGUGUGUCUAUUAUCAGAUCCUCCCAACCAGUGCAGUGAAUAUUGCGUAUCCGC
...(((((((.....((..((((((......(((...(((((((..((((....))))((((((.....)))))).)))))))....)))......))))))..))...))))))).... ( -42.40)
>DroSim_CAF1 5696 120 + 1
UUUGUGCGCAUUUCUUUUGCUGUAUCCUUACGGAUCUCUGAUAGAAGCCCAGGAGGGCAGGCGCUAUGUGUGUCUAUUAUCAGAUCCUCCCAACCAGUGCAGUGAAUAUUGCGUAUCCGC
...(((((((.....((..((((((......(((..((((((((..((((....))))((((((.....)))))).))))))))...)))......))))))..))...))))))).... ( -44.50)
>DroEre_CAF1 7957 120 + 1
UCUGUGCGCAUUUGUUUUGCUGUAUCCUUACGGAGCUCUGAUUGAAGCCCAGGAUGGCAGGCGCUACGUGUGUCUACUAUCCGAUCCUCCGAACCAGUGCAGUGAAUACUGUGUAUCCGC
...(((((((.....((..((((((.....(((((.((.....))......((((((.((((((.....)))))).))))))....))))).....))))))..))...))))))).... ( -40.00)
>DroYak_CAF1 6000 120 + 1
UUUGUGCGCAUUUGCUUUGCUGUAUCCUUACGGAUCCUUGAUCGAAGCCCAGAAUGGCAGGGGCUACGUGUGUCUGUUAACCGAUCCUGCGAACCAGUGCAGUGCAUACUGUGUGUCCGC
...(..(((((.(((.((((.(((....)))((.(((..(((((..(((......)))(((.((.....)).)))......)))))..).)).))...)))).)))....)))))..).. ( -33.60)
>consensus
UUUGUGCGCAUUUCUUUUGCUGUAUCCUUACGGAUCCCUGAUAGAAGCCCAGGAGGGCAGGCGCUAUGUGUGUCUAUUAUCAGAUCCUCCCAACCAGUGCAGUGAAUAUUGCGUAUCCGC
...(((((((.....((((((((((......(((((..((((((..((((....))))((((((.....)))))).))))))))))).........))))))))))...))))))).... (-31.96 = -33.60 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:46 2006