Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,405,725 – 7,405,820 |
Length | 95 |
Max. P | 0.593130 |
Location | 7,405,725 – 7,405,820 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 70.28 |
Mean single sequence MFE | -14.90 |
Consensus MFE | -7.43 |
Energy contribution | -7.43 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.10 |
Mean z-score | -1.75 |
Structure conservation index | 0.50 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593130 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7405725 95 - 22407834 -----UUCAAUUUCCCUGGGUCGUUGCUAUCUGCUAAACUGUAUAUAACUUACCUUUUCCUUGAGCUCAGACACCAGCUUGUUGUGCUUCUCGAGCAAUU -----..((((....(((((((...(((....(..(((..(((.......))).)))..)...)))...))).))))...))))(((((...)))))... ( -17.40) >DroSec_CAF1 409 73 - 1 -----UUAAAUUUCCAUUGA----------------------GCUCAACUUACCUUUUCCUUGAGCUCAGAAACAAGUUUGUUGUGCUUCUCGAGCAAUU -----.(((((((...((((----------------------((((((............))))))))))....)))))))...(((((...)))))... ( -16.70) >DroSim_CAF1 548 73 - 1 -----UUAAAUUUCCAUUGA----------------------GCUCAACUUACCUUUUCCUUGAGCUCAGAAACCAGUUUGUUGUGCUUCUCGAGCAAUU -----.((((((....((((----------------------((((((............)))))))))).....))))))...(((((...)))))... ( -15.60) >DroYak_CAF1 549 90 - 1 ACCUAAUCAAUAUCUAUCU---------AUGCACUCAA-AGUAUUUAACUUACCUUCUCCUUGAGCUCAGAAACCAGCUUGUUGUGCUUCUCCAGCAACU ...................---------..((((...(-(((.....))))...........(((((........)))))...))))............. ( -9.90) >consensus _____UUAAAUUUCCAUUGA______________________ACUCAACUUACCUUUUCCUUGAGCUCAGAAACCAGCUUGUUGUGCUUCUCGAGCAAUU ................................................................(((((((....(((.......)))))).)))).... ( -7.43 = -7.43 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:42 2006