Locus 2643

Sequence ID 2L_DroMel_CAF1
Location 7,393,059 – 7,393,153
Length 94
Max. P 0.970506
window4207 window4208

overview

Window 7

Location 7,393,059 – 7,393,153
Length 94
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 85.36
Mean single sequence MFE -23.90
Consensus MFE -19.74
Energy contribution -19.80
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -2.28
Structure conservation index 0.83
SVM decision value 1.51
SVM RNA-class probability 0.959824
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7393059 94 + 22407834
UAAACAAAAGAUGCUCGACUUGUGUGUGUUUUUUUUUUGUUUUUUUGUUAUGGCCACCCAUUGACUUGCACAUACA--UACAUGUGUGGGUGGGCA
.((((((((((.((.(.((....))).))...))))))))))........((.((((((........((((((...--...)))))))))))).)) ( -25.40)
>DroSec_CAF1 4603 77 + 1
UAAACAAAAGAUGCUCGACUUGUGUGUUUU-----------------UUAUGGCCACCCAUGGACUUGCACAUACA--AACAUGUGUGGGUGGGCA
.....(((((((((.(.....).)))))))-----------------)).((.((((((........((((((...--...)))))))))))).)) ( -22.40)
>DroSim_CAF1 4603 77 + 1
UAAACAAAAGAUGCUCGACUUGUGUGUUUU-----------------UUAUGGCCACCCAUGGACUUGCACAUACA--AACAUGUGUGGGUGGGCA
.....(((((((((.(.....).)))))))-----------------)).((.((((((........((((((...--...)))))))))))).)) ( -22.40)
>DroEre_CAF1 4700 79 + 1
UAAACAAAAGAUGCUCGACUUGUGUGUUUU-----------------UUAUGGCCACCCAUGGACUAACACAUACUCCUACAUGUGUGGGUGGGCA
...........((((((...((((((((.(-----------------((((((....)))))))..))))))))..(((((....))))))))))) ( -25.40)
>consensus
UAAACAAAAGAUGCUCGACUUGUGUGUUUU_________________UUAUGGCCACCCAUGGACUUGCACAUACA__AACAUGUGUGGGUGGGCA
.....((((.((((.......)))).))))....................((.((((((........((((((........)))))))))))).)) (-19.74 = -19.80 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 7,393,059 – 7,393,153
Length 94
Sequences 4
Columns 96
Reading direction reverse
Mean pairwise identity 85.36
Mean single sequence MFE -19.16
Consensus MFE -18.90
Energy contribution -18.90
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.99
SVM decision value 1.66
SVM RNA-class probability 0.970506
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7393059 94 - 22407834
UGCCCACCCACACAUGUA--UGUAUGUGCAAGUCAAUGGGUGGCCAUAACAAAAAAACAAAAAAAAAACACACACAAGUCGAGCAUCUUUUGUUUA
((.(((((((.((.((((--(....))))).))...))))))).))........((((((((.......((......))........)))))))). ( -19.96)
>DroSec_CAF1 4603 77 - 1
UGCCCACCCACACAUGUU--UGUAUGUGCAAGUCCAUGGGUGGCCAUAA-----------------AAAACACACAAGUCGAGCAUCUUUUGUUUA
((.(((((((((((((..--..))))))........))))))).))...-----------------..............(((((.....))))). ( -18.70)
>DroSim_CAF1 4603 77 - 1
UGCCCACCCACACAUGUU--UGUAUGUGCAAGUCCAUGGGUGGCCAUAA-----------------AAAACACACAAGUCGAGCAUCUUUUGUUUA
((.(((((((((((((..--..))))))........))))))).))...-----------------..............(((((.....))))). ( -18.70)
>DroEre_CAF1 4700 79 - 1
UGCCCACCCACACAUGUAGGAGUAUGUGUUAGUCCAUGGGUGGCCAUAA-----------------AAAACACACAAGUCGAGCAUCUUUUGUUUA
((.((((((((....)).(((.((.....)).)))..)))))).))...-----------------..............(((((.....))))). ( -19.30)
>consensus
UGCCCACCCACACAUGUA__UGUAUGUGCAAGUCCAUGGGUGGCCAUAA_________________AAAACACACAAGUCGAGCAUCUUUUGUUUA
((.(((((((((((((......))))))........))))))).))..................................(((((.....))))). (-18.90 = -18.90 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:38 2006