Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,391,609 – 7,391,703 |
Length | 94 |
Max. P | 0.596544 |
Location | 7,391,609 – 7,391,703 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 73.49 |
Mean single sequence MFE | -20.05 |
Consensus MFE | -14.74 |
Energy contribution | -13.85 |
Covariance contribution | -0.89 |
Combinations/Pair | 1.29 |
Mean z-score | -0.75 |
Structure conservation index | 0.73 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.596544 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7391609 94 - 22407834 CAGGGAGUUAUCCUGCUCCUGUUUUCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAGGAAAAAUUUUCUUACAAAAGAUUUCUUUA ..((((((......))))))...((((((...(((((....).)))).))))))....(((((((((....))))))))).((((....)))). ( -26.10) >DroSec_CAF1 2916 73 - 1 CAGGGAGUUAUCCUGCGCCUGUUUUCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAAAU---------------------A ((((..((......)).))))(((((((..((((..(((........)))..))))..))..))))).....---------------------. ( -14.70) >DroSim_CAF1 2922 73 - 1 CAGGGAGUUAUCCUGCGCCUGUUUUCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAAAU---------------------A ((((..((......)).))))(((((((..((((..(((........)))..))))..))..))))).....---------------------. ( -14.70) >DroEre_CAF1 3068 89 - 1 CAGGGAGCUAUCCUGCGCCUGUUUCCAUGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAU--AUAUUCAAGUACAAAA---GUA ((((..((......)).))))..((((((...(((((....).)))).))))))....(((.(((.....--...)))...)))....---... ( -19.30) >DroYak_CAF1 3029 94 - 1 CAGGGAGUUAUCCUGCGCCUGUUUCCACGAGAUUUCCGUCAGGGAGAGCGUGGAUCAAGUAAGAAGAAAAGUACACUAAAAUAAAAUAAAUUUA ..((((....))))..((.((..((((((...(((((.....))))).)))))).)).)).................................. ( -20.60) >DroAna_CAF1 2808 82 - 1 CAGGGAAUUGUCCUGCGCCUGUUUCCAUGAGAUUUCAGUCCGAGAGAAUGUGGACCAGGUGGGCUAUAAAGCUUUCC-AGGC-----U------ (((((.....))))).((((...((((((...((((.....))))...))))))...((..((((....))))..))-))))-----.------ ( -24.90) >consensus CAGGGAGUUAUCCUGCGCCUGUUUCCACGAGAUUUCCGUCAGAGAGAGCGUGGAUCAAGUAAGAAGAAAAAU_U_CU_A______________A (((((.....)))))...((...((((((...((((.....))))...))))))...))................................... (-14.74 = -13.85 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:37 2006