Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,372,892 – 7,372,984 |
Length | 92 |
Max. P | 0.970358 |
Location | 7,372,892 – 7,372,984 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -26.00 |
Energy contribution | -26.00 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 1.00 |
SVM decision value | 1.66 |
SVM RNA-class probability | 0.970358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7372892 92 + 22407834 UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA .................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00) >DroSec_CAF1 158411 92 + 1 UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA .................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00) >DroSim_CAF1 165477 92 + 1 UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA .................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00) >DroEre_CAF1 162095 92 + 1 UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA .................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00) >DroYak_CAF1 165669 92 + 1 UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA .................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... ( -26.00) >consensus UGGACAUGGAACCUCAACGAUGGGGCGACCAAGUGAAACGAAACAAAUCAAGUCGCCCGGUCGCCGAGUCGCACAAUGACUGACAAUCGAAA .................((((.((((((((..((((...((......))...))))..))))))).(((((.....)))))..).))))... (-26.00 = -26.00 + 0.00)
Location | 7,372,892 – 7,372,984 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -29.50 |
Energy contribution | -29.50 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.72 |
Structure conservation index | 1.00 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7372892 92 - 22407834 UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA ....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50) >DroSec_CAF1 158411 92 - 1 UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA ....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50) >DroSim_CAF1 165477 92 - 1 UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA ....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50) >DroEre_CAF1 162095 92 - 1 UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA ....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50) >DroYak_CAF1 165669 92 - 1 UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA ....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... ( -29.50) >consensus UUUCGAUUGUCAGUCAUUGUGCGACUCGGCGACCGGGCGACUUGAUUUGUUUCGUUUCACUUGGUCGCCCCAUCGUUGAGGUUCCAUGUCCA ....(((.....)))...(((.((((((((((..(((((((((((..((...))..)))...))))))))..))))))))..)))))..... (-29.50 = -29.50 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:28 2006