Locus 2637

Sequence ID 2L_DroMel_CAF1
Location 7,370,298 – 7,370,398
Length 100
Max. P 0.585325
window4195

overview

Window 5

Location 7,370,298 – 7,370,398
Length 100
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.18
Mean single sequence MFE -32.58
Consensus MFE -21.93
Energy contribution -23.72
Covariance contribution 1.78
Combinations/Pair 1.23
Mean z-score -1.14
Structure conservation index 0.67
SVM decision value 0.10
SVM RNA-class probability 0.585325
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7370298 100 - 22407834
AACUCACCUUUCUUCAGCAAACUGGAGGCAUGCGGAUUGCGGCUCUUUGUGCUCAGCGACGAACAGUUCCACCGAUGCCAUUGAAACUGUUGGG--------UGAA----------UG--
...((((((..((((((....)))))(((((.(((..((..(((.(((((((...)).))))).)))..)))))))))).........)..)))--------))).----------..-- ( -31.20)
>DroVir_CAF1 211092 118 - 1
CACUCACCUUUCUUGAGCAGAUUGGAGGCAUGCGGAUUGCGGCUCUUCGUGCUCAGAGACGAGCAGUUCCAGCGAUGCCACUGAAACUACAUUCACAUAAAAUGAUUAGCUAAUGAUG--
..........((...(((...(..(.((((((((((((((..((((........))))....)))).))).)).))))).)..).....((((.......))))....)))...))..-- ( -28.20)
>DroPse_CAF1 190428 105 - 1
---CUACCUUUCUUCAGCAGAUUGGAGGCAUGCGGAUUGCGGCUCUUUGUGCUCAGCGAUGAGCAGUUCCAGCGAUGCCAUUGAAACUGUUGAGGAAGAGAGAGAU----------UG--
---((..(((((((((((((.((.((((((((((((..((.((((.((((.....)))).)))).))))).)).))))).)).)).))))))))).))))..))..----------..-- ( -40.70)
>DroWil_CAF1 226832 98 - 1
UACUUACCUUUCUUCAGCAGAUUGGAAGCAUGCGGAUUGCGACUUUUUGUGCUCAACGAUGAACAGUUCCAGCGAUGCCAUUGAAACUGGUGGG--------AAAA--------------
..((((((((((....(((..((((((.(((.((....((.((.....))))....))))).....))))))...)))....))))..))))))--------....-------------- ( -22.60)
>DroMoj_CAF1 225762 120 - 1
CACUUACCUUUCUUCAGCAGAUUGGAGGCGUGCGGAUUGCGGCUCUUUGUGCUCAGCGACGAGCAGUUCCAGCGAUGCCACUGAAACUGCAACCACAUAAAAUGAUUAGCUAAUUAUUGC
................((((.(..(.((((((((((..((.((((.((((.....)))).)))).))))).)).))))).)..)..))))..........(((((((....))))))).. ( -32.10)
>DroPer_CAF1 192573 105 - 1
---CUACCUUUCUUCAGCAGAUUGGAGGCAUGCGGAUUGCGGCUCUUUGUGCUCAGCGAUGAGCAGUUCCAGCGAUGCCAUUGAAACUGUUGAGGAAGAGAGAGAU----------UG--
---((..(((((((((((((.((.((((((((((((..((.((((.((((.....)))).)))).))))).)).))))).)).)).))))))))).))))..))..----------..-- ( -40.70)
>consensus
_ACUUACCUUUCUUCAGCAGAUUGGAGGCAUGCGGAUUGCGGCUCUUUGUGCUCAGCGACGAGCAGUUCCAGCGAUGCCAUUGAAACUGUUGAG__A_A_A_AGAU__________UG__
.............(((((((.((.((((((((((((..((.((((.((((.....)))).)))).))))).)).))))).)).)).)))))))........................... (-21.93 = -23.72 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:26 2006