Locus 2636

Sequence ID 2L_DroMel_CAF1
Location 7,369,036 – 7,369,129
Length 93
Max. P 0.813451
window4194

overview

Window 4

Location 7,369,036 – 7,369,129
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 88.46
Mean single sequence MFE -21.19
Consensus MFE -18.09
Energy contribution -18.58
Covariance contribution 0.49
Combinations/Pair 1.09
Mean z-score -1.95
Structure conservation index 0.85
SVM decision value 0.66
SVM RNA-class probability 0.813451
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7369036 93 + 22407834
CGAUGUGGCAACAACUUUACCCCAACAUCAGCUGAGGUUAGACCUAUAGCUAAACUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCA
.(((((.(.((((((((((..........((((((((.....))).))))).........))))))))))).)))))................ ( -23.21)
>DroSec_CAF1 154588 93 + 1
CGAUGUGGCAACAACUUUACCCCAACAUCAGCUGAGGUUAGACCUAUAGCUAAACUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCA
.(((((.(.((((((((((..........((((((((.....))).))))).........))))))))))).)))))................ ( -23.21)
>DroSim_CAF1 161665 93 + 1
CGAUGUGGCAACAACUUUACCCCAACAUCAGCUGAGGUUAGACCUAUAGCUAAACUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCA
.(((((.(.((((((((((..........((((((((.....))).))))).........))))))))))).)))))................ ( -23.21)
>DroEre_CAF1 158044 93 + 1
CGAUGUGGCAACAACUUUACCCCAACAUCAGCUGAAGUUAGACCUAUAGCUAAACUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCA
.(((((.(.((((((((((............((((..((((........))))..)))).))))))))))).)))))................ ( -20.32)
>DroYak_CAF1 161664 93 + 1
CGAUGUGGCAACAACUUUACCCCAACAUCAGCUGAAGUUAGACCUAUAGCUAAACUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCA
.(((((.(.((((((((((............((((..((((........))))..)))).))))))))))).)))))................ ( -20.32)
>DroAna_CAF1 164437 70 + 1
CGAUGUGGCAACAACUUCAGU----------------UUAA------AGCUU-CGUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCU
.(((((.(.((((((((((((----------------....------.)).(-(....))))))))))))).)))))................ ( -16.90)
>consensus
CGAUGUGGCAACAACUUUACCCCAACAUCAGCUGAGGUUAGACCUAUAGCUAAACUCAGAUGAAGUUGUUCAACGUCAACUGGCACUCACUCA
.(((((.(.((((((((((..........(((((.((......)).))))).........))))))))))).)))))................ (-18.09 = -18.58 +   0.49)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:25 2006