Locus 2634

Sequence ID 2L_DroMel_CAF1
Location 7,362,512 – 7,362,607
Length 95
Max. P 0.574398
window4191

overview

Window 1

Location 7,362,512 – 7,362,607
Length 95
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.08
Mean single sequence MFE -19.27
Consensus MFE -13.09
Energy contribution -12.95
Covariance contribution -0.14
Combinations/Pair 1.06
Mean z-score -1.56
Structure conservation index 0.68
SVM decision value 0.08
SVM RNA-class probability 0.574398
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7362512 95 - 22407834
CUCU---CCCAUGUCAUUGUUGUCCUGUCAAGGACUCCAAUUAUUGCAAUUUCGUUCCUUUGUUGUUG------------UUGCUG------GCCUUUGAAAUAUGCUAAUUUAUA
....---........((((..(((((....)))))..))))....(((((((((..((...((.....------------..)).)------)....)))))).)))......... ( -16.60)
>DroPse_CAF1 182121 113 - 1
CUUU---CUCUUUCCAUUGUUGUCCUCUCAAGGACUCCAAUUAUUGCAAUUUCGUUCCUUUGUUGUUGGCGUAUUUUUUUUUGCAGGAGUAUGCCUUUGAAAUAUGCUAAUUUCUA
....---........((((..(((((....)))))..))))....................(..(((((((((((((.....(((......)))....)))))))))))))..).. ( -24.80)
>DroEre_CAF1 151413 95 - 1
CUCCA---CCAUGUCAUUGUUGUCCUGUCAAGGACUCCAAUUAUUGCAAUUUCGUUCCUUUGUUGUUG------------UUGCUG------GCCUUUGAAAUAUGCUAAUUUACA
.....---.......((((..(((((....)))))..))))....(((((((((..((...((.....------------..)).)------)....)))))).)))......... ( -16.60)
>DroYak_CAF1 154486 98 - 1
CUCCACACCCAUGUCAUUGUUGUCCUGUCAAGGACUCCAAUUAUUGCAAUUUCAUUCCUUUGUUGUUG------------UUGCCG------GCCUUUGAAAUAUGCUAAUUUACA
............(((((((..(((((....)))))..))))....(((((..((.........))..)------------)))).)------))...................... ( -17.00)
>DroAna_CAF1 156768 94 - 1
CUCU-------UCUCAUUGUUGUCCUGUCAAGGACUCCAAUUAUUGCAAUUUCGUUCCUUUGUUGCUGUUG---------UUGUUU------GCCUUUGAAAUAUGCUAAUUUAUA
....-------....((((..(((((....)))))..))))....(((((((((..........((....)---------).....------.....)))))).)))......... ( -15.85)
>DroPer_CAF1 184205 110 - 1
CUUU---CUCUUCCCAUUGUUGUCCUCUCAAGGACUCCAAUUAUUGCAAUUUCGUUCCUUUGUUGUUGGGGUAUUU---UUUGCGGGAGUAUGCCUUUGAAAUAUGCUAAUUUCUA
....---...(((((((((..(((((....)))))..))))....((((......((((........)))).....---.))))))))).........(((((......))))).. ( -24.80)
>consensus
CUCU___CCCAUGUCAUUGUUGUCCUGUCAAGGACUCCAAUUAUUGCAAUUUCGUUCCUUUGUUGUUG____________UUGCUG______GCCUUUGAAAUAUGCUAAUUUAUA
...............((((..(((((....)))))..))))....(((((((((...........................................)))))).)))......... (-13.09 = -12.95 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:22 2006