Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,356,455 – 7,356,546 |
Length | 91 |
Max. P | 0.794727 |
Location | 7,356,455 – 7,356,546 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 82.62 |
Mean single sequence MFE | -30.47 |
Consensus MFE | -18.76 |
Energy contribution | -19.27 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.28 |
Mean z-score | -2.83 |
Structure conservation index | 0.62 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.794727 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7356455 91 + 22407834 ACACCAAAG--UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU---GUGGCCGUUUUCUGGG-CUCAACACCACAAAGGACUACCGCGCUAAUU .........--(((.(((....))))))(((((((((((((((...---..))))(((.....))-)....)))))))))))............... ( -33.20) >DroSec_CAF1 141930 91 + 1 ACACCAAAG--UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU---GUGGCCGUUUUCAGGG-CUCAACACCACAAAGGACUACCGCGCUAAUU .........--(((.(((....))))))(((((((((((((((...---..))))(((.....))-)....)))))))))))............... ( -33.20) >DroSim_CAF1 148964 91 + 1 ACACCAAAG--UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU---GUGGCCGUUUUCUGGG-CUCAACACCACAAAGGACUACCGCGCUAAUU .........--(((.(((....))))))(((((((((((((((...---..))))(((.....))-)....)))))))))))............... ( -33.20) >DroEre_CAF1 145159 89 + 1 ACACCAAAG--CUGAACCUUUU-GCCAACCUUUGUGGUGGCCUAUU---GUGGCCGCUUUCUG--GCUCAACGCCACAAAGGACUACCGCGCUAAUU .......((--(((........-..)).((((((((((((((....---..))))(((....)--)).....))))))))))........))).... ( -27.80) >DroYak_CAF1 147920 95 + 1 ACACCAAAG--UUGAACCUUCUGGCCAACCUUUGUGUUGGGCUAUUGUUGUGGCCGUUUUCUGUGCCCAAACUCCACAAAGGACUACCGCGCUAAUU ((((.((.(--(((..((....)).)))).)).))))..((((((....)))))).......((((......(((.....))).....))))..... ( -21.80) >DroAna_CAF1 150499 81 + 1 ACACCAAAGCGUUGCGCCUU-----------UUGUGGUGGUUUAUU---GUGGCUGGACUUUUAA-CUCU-GGCCACAAAGGACUACCGCACUAAUU ........(((...)))...-----------.((((((((((..((---(((((..((.......-.)).-.)))))))..))))))))))...... ( -33.60) >consensus ACACCAAAG__UUGAGCCUUUUGGCCAACCUUUGUGGUGGGCCAUU___GUGGCCGUUUUCUGGG_CUCAACACCACAAAGGACUACCGCGCUAAUU ............................(((((((((((((((((....))))))(....)..........)))))))))))............... (-18.76 = -19.27 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:21 2006