Locus 2630

Sequence ID 2L_DroMel_CAF1
Location 7,337,129 – 7,337,220
Length 91
Max. P 0.728869
window4186

overview

Window 6

Location 7,337,129 – 7,337,220
Length 91
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 83.65
Mean single sequence MFE -24.72
Consensus MFE -22.19
Energy contribution -21.25
Covariance contribution -0.94
Combinations/Pair 1.32
Mean z-score -1.53
Structure conservation index 0.90
SVM decision value 0.42
SVM RNA-class probability 0.728869
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7337129 91 + 22407834
GUGCAUUUCGCGAAAUUCGCAGGCGAAGUGCACUAAAUCAAACGGUCGUUGUGUGAGCGAUUGAGAUCAUAAUCGAUGGGCCAGAGA---UGGG
(((((((((((...........))))))))))).........(.((((...(((((.(......).)))))..)))).).(((....---))). ( -29.90)
>DroPse_CAF1 160432 77 + 1
GUGUAUUUUUC--------CAAGCAAAGUGCACUAAAUCAAACGGUCAUUGUGUGAGCGAUUGAGAUCGUAAUCAGUGGACCAGA---------
(((((((((..--------.....)))))))))..........((((((((.....(((((....)))))...)))).))))...--------- ( -19.30)
>DroSim_CAF1 136781 94 + 1
GUGCAUUUUGCGAAAUUCGCAGGCGAAGUGCACUAAAUCAAACGGUCGUUGUGUGAGCGAUUGAGAUCAUAAUCGAUGGGCCAGAGAUGAUGGG
(((((((((((...........))))))))))).........(.((((...(((((.(......).)))))..)))).).(((.......))). ( -27.50)
>DroEre_CAF1 132696 91 + 1
GUGCAUUUGGCGAAACUCGCAGGCGAAGUGCACUAAAUCAAACGGUCGUUGUGUGAGCGAUUGAGAUCAUAAUCGAUGGGCCAGAGA---UGGG
((((((((.((...........)).)))))))).........(.((((...(((((.(......).)))))..)))).).(((....---))). ( -26.10)
>DroYak_CAF1 134838 90 + 1
GUGCAUUUUGCGAAAUUCGCAGGCGAAGUGCACUAAAUCAAACGGUCGUUCUGUGAGCGAUUGAGAUCAUAAUCGAUGGGCCAGAGA---CGU-
(((((((((((...........)))))))))))........(((....(((((.(..(.(((((........))))).).)))))).---)))- ( -26.20)
>DroPer_CAF1 162284 77 + 1
GUGUAUUUUUC--------CAAGCAAAGUGCACUAAAUCAAACGGUCAUUGUGUGAGCGAUUGAGAUCGUAAUCAGUGGACCAGA---------
(((((((((..--------.....)))))))))..........((((((((.....(((((....)))))...)))).))))...--------- ( -19.30)
>consensus
GUGCAUUUUGCGAAAUUCGCAGGCGAAGUGCACUAAAUCAAACGGUCGUUGUGUGAGCGAUUGAGAUCAUAAUCGAUGGGCCAGAGA___UGG_
(((((((((((...........)))))))))))..........(((((((((((((.(......).)))))..)))).))))............ (-22.19 = -21.25 +  -0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:17 2006