Locus 263

Sequence ID 2L_DroMel_CAF1
Location 747,022 – 747,121
Length 99
Max. P 0.977181
window420

overview

Window 0

Location 747,022 – 747,121
Length 99
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.01
Mean single sequence MFE -36.68
Consensus MFE -23.16
Energy contribution -25.01
Covariance contribution 1.85
Combinations/Pair 1.15
Mean z-score -2.89
Structure conservation index 0.63
SVM decision value 1.79
SVM RNA-class probability 0.977181
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 747022 99 - 22407834
GUGUCGCGGUUUUUCCAAAAGAGGAAACGAGAAGCUGCGACUGUGACUGA------AGCUUGCAAAUUGAGUUAGUCGC-CAGU--UGGCCAGGAGGCA--CGGCACAUA
((((((((((((((((....).(....)))))))))))((((((((((((------..(.........)..))))))).-))))--).(((....))).--.)))))... ( -37.40)
>DroPse_CAF1 9921 88 - 1
AUGCCGCGGUU-UACCGCCACAG---------AGCUGC------GGCUGA------AGCUUGUAAAUUGAUUUGGUGGCACAGCUCUGGCGAGGCGACAACCGCGACAGU
.((.(((((((-...((((.(((---------((((((------.((..(------(.(.........).))..)).))..)))))))....))))..))))))).)).. ( -37.50)
>DroSec_CAF1 8555 99 - 1
GUGUCGCGGUUUUUCCAGAAGAGGAAAGGAAAAGCUGCGACUGUGACUGA------AGCUUGCAAAUUGAGUUAGUCGC-CAGU--UGGCCAGGAGGCA--CGGCACUCA
..((((((((((((((...........)))))))))))))).((((((((------..(.........)..))))))))-..((--(((((....))).--))))..... ( -39.70)
>DroSim_CAF1 11977 105 - 1
GUGUCGCGGUUUUUCCAGAAGAGGAAAGGAAAAGCUGCGACUGUGACUGAAGCUGAAGCUUGCAAAUUGAGUUAGUCGC-CAGU--UGGCCAGGAGGCA--CGGCACACA
((((((((((((((((...........)))))))))))(((((((((((((((....)))...........))))))).-))))--).(((....))).--.)))))... ( -39.50)
>DroEre_CAF1 8873 93 - 1
GUGUCGCGGUU-UUCCAGCAGAGCAAAGGAAAAGCUGCGACUGUGACUGA------AGCUUGCAAAUUGAGUUAGUCGC-CAGA--UGGCCAGCAGGCA-------CACA
(((((((((((-((((.((...))...)).))))))))).((((((((((------..(.........)..))))))((-(...--.)))..)))))))-------)... ( -31.40)
>DroYak_CAF1 11269 94 - 1
GUGUCGCGGUUUUUCCAGCAGAGAAAAGGAAAAGCUGCGACUGUGACUGA------AGCCUGCAAAUUGAGUUAGUCGC-CAGA--UGGCCAGGAGGCA-------CACA
..((((((((((((((...........)))))))))))))).((((((((------..(.........)..))))))))-....--(((((....))).-------)).. ( -34.60)
>consensus
GUGUCGCGGUUUUUCCAGAAGAGGAAAGGAAAAGCUGCGACUGUGACUGA______AGCUUGCAAAUUGAGUUAGUCGC_CAGU__UGGCCAGGAGGCA__CGGCACACA
..((((((((((((((...........)))))))))))))).((((((((.......(....)........)))))))).........(((....)))............ (-23.16 = -25.01 +   1.85)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:30 2006