| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,336,074 – 7,336,171 |
| Length | 97 |
| Max. P | 0.532809 |
| Location | 7,336,074 – 7,336,171 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 84.18 |
| Mean single sequence MFE | -24.58 |
| Consensus MFE | -20.92 |
| Energy contribution | -20.82 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.41 |
| Structure conservation index | 0.85 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.532809 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7336074 97 - 22407834 ----UACAUAAAGUAUAGGAGGA---GACCUCUUGGGACAAAUUCAUUGAUGCCACUUUGCUGGCAAAUAUUUUGGCAAAGUGCAUAACUUGUGUGUUAGAAGG ----(((((((.((.(((((((.---..)))))))..))..........((((.(((((((..(........)..)))))))))))...)))))))........ ( -27.70) >DroSec_CAF1 128713 104 - 1 UAUAUAGAUAAAGUACAGGAGGAUGAGACCUCUUGGGACAAAUUCAUUGAUGCCACUUUGUUGGCAAAUAUUUUGGCAAAGUGCAUAACUUGUGUGUUAGAAGG ...............(((((((......))))))).((((....((...((((.(((((((..(........)..)))))))))))....))..))))...... ( -27.30) >DroSim_CAF1 135710 104 - 1 CAUAUAGAUAAAGUAUAGGAGGAGGAACCCUCUUGGGACAAAUUCAUUGAUGCCACUUUGCUGGCAAAUAUUUUGGCAAAGUGCAUAACUUGUGUGUUAGAAGG (((((((.....((.(((((((......)))))))..))..........((((.(((((((..(........)..)))))))))))...)))))))........ ( -28.90) >DroEre_CAF1 131697 100 - 1 -GCAUGUAUAAAAUGUAGGAGCA---GACCUCUUGGGACAAAUUCAUUGAUGCCACUUUGCUGGCAAAUAUUUUGGCAAAGUGCAUAACUUGUGUGUUAGAAGG -((.(.(((.....))).).)).---..(((..(((.(((.........((((.(((((((..(........)..)))))))))))......))).)))..))) ( -24.16) >DroYak_CAF1 133746 101 - 1 UAUAUAUAUGAAAUAUAGGAGCA---GACCUCUUGGGACAAAUUCAUUGAUGCCACUUUGCUGGCAGAUAUUUUGGCAAAGUGCAUAACUUGUGUGUUAGAAGG ...........((((((.(((..---..((....)).............((((.(((((((..(........)..)))))))))))..))).))))))...... ( -23.00) >DroAna_CAF1 135727 87 - 1 -------------GAGAGAAGCA---UCCUCUUUGGGGCGAAUUCAUUGAUGCCACUUUGCUGGCAAAUAUUUUGGCAAACUGCAUAACUUAUGUGUAAGAAA- -------------..(((..((.---(((.....)))))...)))....((((...(((((..(........)..)))))..))))..((((....))))...- ( -16.40) >consensus _AUAUAGAUAAAGUAUAGGAGCA___GACCUCUUGGGACAAAUUCAUUGAUGCCACUUUGCUGGCAAAUAUUUUGGCAAAGUGCAUAACUUGUGUGUUAGAAGG ...............((((((........)))))).((((....((...((((.(((((((..(........)..)))))))))))....))..))))...... (-20.92 = -20.82 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:16 2006