Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,334,942 – 7,335,036 |
Length | 94 |
Max. P | 0.980581 |
Location | 7,334,942 – 7,335,036 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 68.14 |
Mean single sequence MFE | -20.86 |
Consensus MFE | -16.98 |
Energy contribution | -17.26 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.12 |
Mean z-score | -0.88 |
Structure conservation index | 0.81 |
SVM decision value | 1.87 |
SVM RNA-class probability | 0.980581 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7334942 94 + 22407834 UACAUAUACA-AUAGCACUCACU------CACUAAACAAAGU----AAAUUAAAACAGCUCAACGGGCCAAAAUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC ..........-............------.....((((((.(----(((((......(((.....)))...)))))).))))))((((((......))))))... ( -20.80) >DroPse_CAF1 157545 79 + 1 GAGAGAGA-------UACCCACA------C-----AGAAAGA----AUACGAGUAC----GAACGGGCCAGAGUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC ........-------........------.-----.......----..........----.((((((((((...))))))))))((((((......))))))... ( -19.50) >DroEre_CAF1 130655 95 + 1 UAUGCGCAUAUACAGCACUCACU------CACUAAACAAAGU----AAAUUAAAACAGCUCAACGGGCCAGAAUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC ..(((.........)))......------.....((((((.(----(((((......(((.....)))...)))))).))))))((((((......))))))... ( -23.50) >DroAna_CAF1 134833 101 + 1 CCCCUAUAU-UAUAAUACUCAUUUUGGUUUAAAAAACAAAACACAAAAAUUCCACCAGCUCAGCGGGCCAGAAUUUGGUUUGUUGCCGCUGCAUUUG---GCUUC .........-...........(((((((((........)))).)))))...(((.((((.(((((((((((...)))))))))))..))))....))---).... ( -21.00) >DroPer_CAF1 159395 79 + 1 GAGAGAGA-------UACCCACA------C-----AGAAAGA----AUACGAGUAC----GAACGGGCCAGAGUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC ........-------........------.-----.......----..........----.((((((((((...))))))))))((((((......))))))... ( -19.50) >consensus GACAGAGA___A_A_UACUCACU______CA__AAACAAAGA____AAAUUAAAACAGCUCAACGGGCCAGAAUUUGGUUUGUUGCCGCUGCAUUUGGCGGCUUC .............................................................((((((((((...))))))))))((((((......))))))... (-16.98 = -17.26 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:15 2006