Locus 2627

Sequence ID 2L_DroMel_CAF1
Location 7,329,270 – 7,329,362
Length 92
Max. P 0.523965
window4183

overview

Window 3

Location 7,329,270 – 7,329,362
Length 92
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 81.77
Mean single sequence MFE -23.22
Consensus MFE -13.98
Energy contribution -16.04
Covariance contribution 2.06
Combinations/Pair 1.05
Mean z-score -1.80
Structure conservation index 0.60
SVM decision value -0.02
SVM RNA-class probability 0.523965
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7329270 92 + 22407834
-----AUGGAAAUGGAAAUGGUGGAAUUG---------GUGGGGCGAUAGUGGCUUAAUUUAUGUCGGCCAGUAAAAAUCAUGUUGAAAUCCAUUUUCAUAGAGUC
-----(((((((((((..((((.((...(---------((..(((.......)))..)))....)).)))).......((.....))..)))))))))))...... ( -24.10)
>DroSec_CAF1 121952 92 + 1
-----AUGGAAAUGGAAAUGGUCGAAUUG---------CUGGGGCGAUAGUGGCUUAAUUUAUGUCGGCCAGUAAAAAUCAUGUUGAAAUCCAUUUUCAUAGAGUC
-----(((((((((((..(((((((....---------...((((.......))))........))))))).......((.....))..)))))))))))...... ( -25.96)
>DroSim_CAF1 130859 92 + 1
-----AUGGAAAUGGAAAUGGUCAAAUUG---------CUGGGGCGAUAGUGGCUUAAUUUAUGUCGGCCAGUAAAAAUCAUGUUGAAAUCCAUUUUCAUAGAGUC
-----(((((((((((.(((((....(((---------(((.(.(((((.............))))).)))))))..))))).......)))))))))))...... ( -24.72)
>DroEre_CAF1 124757 106 + 1
UGGGAAUGGGAAUGGAAAUGGUCGAAUUGGUCGAAUCGGUGGGGCGAUAGUGGCUUAAUUUAUGUCGGCCAGUAAAAAUCAUGUUGAAAUCCAUUUUCAUAGAGUC
((..((((((..(.((.(((((...(((((((((((..((..(((.......)))..))..)).)))))))))....))))).)).)..))))))..))....... ( -29.40)
>DroYak_CAF1 126422 97 + 1
UGCGAAUGGAAAUGGAAAUGUUCGAAUUG---------GUGGGGCGAUAGUGGCUUAAUUUAUGUCGGCCAGUAAAAAUCAUGUUGAAAUCCAUUUUCAUAGAGUC
.....(((((((((((....(((((..((---------((.((.(((((.............))))).)).......))))..))))).)))))))))))...... ( -25.52)
>DroAna_CAF1 129128 70 + 1
---------------------------UU---------UUGGUAGGAUAGUGGGCUAAUUUAUGUCGGCCAGUAAAAAUCAUGUAGAAAUCCAUUUUCAUAGAGAU
---------------------------..---------......((((....(((..((....))..)))........((.....)).)))).............. (  -9.60)
>consensus
_____AUGGAAAUGGAAAUGGUCGAAUUG_________GUGGGGCGAUAGUGGCUUAAUUUAUGUCGGCCAGUAAAAAUCAUGUUGAAAUCCAUUUUCAUAGAGUC
.....(((((((((((.........................((.(((((.............))))).))........((.....))..)))))))))))...... (-13.98 = -16.04 +   2.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:14 2006