Locus 2626

Sequence ID 2L_DroMel_CAF1
Location 7,324,464 – 7,324,566
Length 102
Max. P 0.630599
window4182

overview

Window 2

Location 7,324,464 – 7,324,566
Length 102
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 94.69
Mean single sequence MFE -36.90
Consensus MFE -29.95
Energy contribution -30.12
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.20
Structure conservation index 0.81
SVM decision value 0.20
SVM RNA-class probability 0.630599
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7324464 102 - 22407834
-AAACCGGCAGUUCGACAUUUUU-GCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAAUGUCGCUCAGCUGUCGGCGGCCGUGUGAGCGACAGAAUAUAAAG
-...((((((((((((((((..(-(((..((((.((((.....)))))))).))))..)))))))...)))))))))....(((....)))............. ( -36.80)
>DroPse_CAF1 146394 103 - 1
-AAACCGGCAGUUCGAGAUUUUUCGCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAAUGUCGCUCAGCUGUCGGUGGCGGUGUGACCGACGAAAAAUAAAG
-..((((((((((...........((........)).(((((((((((....)))).....)))))))))))))))))..(((.....)))............. ( -36.20)
>DroEre_CAF1 119797 102 - 1
-AAACCGGCAGUUCGACAUUUUU-GCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAAUGUCGCUCAGCUGUCGGCGGCCGUGUGAGCGACAGAAAAUAAAG
-...((((((((((((((((..(-(((..((((.((((.....)))))))).))))..)))))))...)))))))))....(((....)))............. ( -36.80)
>DroYak_CAF1 121304 103 - 1
AAAACCGGCAGUUGGACAUUUUU-GCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAAUGUCGCUCAGCUGUCGGCGGCCGUGUGAGCGACAGAAAAUAAAG
....((((((((((.....((((-((........)))))))))))))).)).........(((((((((((((....))))....))))))))).......... ( -37.40)
>DroAna_CAF1 124235 102 - 1
-AAACCGGCAGUUCGACAUUUUU-GCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAGUGUCGCUCAGCUGUCCGCGGCGGUGUGAGCGACAGAAAAUAAAG
-...((((((((.((....((((-((........)))))))))))))).)).........((((((((((((((.....))))).))))))))).......... ( -38.00)
>DroPer_CAF1 148153 103 - 1
-AAACCGGCAGUUCGAGAUUUUUCGCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAAUGUCGCUCAGCUGUCGGUGGCGGUGUGACCGACGAAAAAUAAAG
-..((((((((((...........((........)).(((((((((((....)))).....)))))))))))))))))..(((.....)))............. ( -36.20)
>consensus
_AAACCGGCAGUUCGACAUUUUU_GCUAAUUUGUGCAGGGCGACUGCCAGGAGGCAUUAAUGUCGCUCAGCUGUCGGCGGCCGUGUGAGCGACAGAAAAUAAAG
....(((((((((...........((........)).(((((((((((....)))).....))))))))))))))))........................... (-29.95 = -30.12 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:13 2006