Locus 2625

Sequence ID 2L_DroMel_CAF1
Location 7,313,168 – 7,313,278
Length 110
Max. P 0.640703
window4181

overview

Window 1

Location 7,313,168 – 7,313,278
Length 110
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 75.46
Mean single sequence MFE -22.21
Consensus MFE -11.50
Energy contribution -12.06
Covariance contribution 0.56
Combinations/Pair 1.18
Mean z-score -2.01
Structure conservation index 0.52
SVM decision value 0.22
SVM RNA-class probability 0.640703
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7313168 110 + 22407834
U-GAGAAACGAAUA---CAAAUAGAGCCAAAAUACUACUAUACAAUACUAUAAGAAAUGAGGUAUGAUUUGGCUUUAUUUCAUAUGCUCUUUU--CGCAGUGUACCUCGUAAUAAG
.-.....(((((((---(((((((((((((((((((.(....................).)))))..)))))))))))))....(((......--.)))))))...))))...... ( -22.05)
>DroSec_CAF1 106066 103 + 1
U-GGGAAACGGAUAUUCUAAAUAGAGCCAAUA----------UAAUACUAUACGAAAUGAGGUAUUAUUUGGCUUUAUUUCGUAUACUCUUUU--CGCAGUGUACCUCGUAAUAAG
(-(.((((.(..(((.(.((((((((((((.(----------(((((((...........)))))))))))))))))))).).)))..).)))--).))................. ( -27.20)
>DroSim_CAF1 112931 100 + 1
U-GAGAAACGGAUA---UAAAUAGAGCCAAUU----------UAAUCCUAUACGAAAUAAGGUAUGAUUUGGCUUUAUUUCAUAUACUCUUUU--CGCAGUGUACCUCGUAAUAAG
.-(((.........---.((((((((((((.(----------((..(((..........)))..))).))))))))))))..((((((.....--...)))))).)))........ ( -21.90)
>DroYak_CAF1 109979 92 + 1
UGAAAAAACGUUUA---UAAAUAGAGUCU--------------------AUAC-AAAUAUGGUAUUUUAUGGCUCUAUUUUAUAUACCUUUUUUGCUCAGUGCACCUCGUAAUAAG
..((((((.((.((---(((((((((((.--------------------((((-.......)))).....))))))).)))))).)).))))))((.....))............. ( -17.70)
>consensus
U_GAGAAACGGAUA___UAAAUAGAGCCAAUA__________UAAUACUAUACGAAAUAAGGUAUGAUUUGGCUUUAUUUCAUAUACUCUUUU__CGCAGUGUACCUCGUAAUAAG
.......((((.......((((((((((((......................................))))))))))))..((((((..........))))))..))))...... (-11.50 = -12.06 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:12 2006