Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,297,837 – 7,297,927 |
Length | 90 |
Max. P | 0.775982 |
Location | 7,297,837 – 7,297,927 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 79.26 |
Mean single sequence MFE | -16.33 |
Consensus MFE | -12.20 |
Energy contribution | -12.53 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.37 |
Structure conservation index | 0.75 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.775982 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7297837 90 + 22407834 AAUAAAUAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUGUCCAAAA-AGGAUCGAAGUUAGUUGA ...........(((.(((((.((((((.....)))))).....)))))..(((....)))((((((((....-.))))...)))).))).. ( -19.00) >DroPse_CAF1 116386 88 + 1 UAAAAGAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUGCU-UA-A-AGGAUCGAACGAUGGAGC ...............(((((.((((((.....)))))).....)))))..(((....)))....(((-(.-.-...(((....))).)))) ( -16.10) >DroGri_CAF1 105604 78 + 1 AAUAUAAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGCUGACUG--CAA-A-ACGAU----GCU-----C .............(((((((.((((((.....)))))).....))))).))....((((......--...-.-.....----)))-----) ( -14.46) >DroMoj_CAF1 128921 75 + 1 AACACACAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGCUGACUG--CAA-AAGCAGA------------- .............(((((((.((((((.....)))))).....))))).))...........(((--(..-..)))).------------- ( -16.40) >DroAna_CAF1 96345 87 + 1 AAUAAAUAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACU--CCAA-A-AUGAUCGAUCCAAGAGGG .............(((((((.((((((.....)))))).....))))).)).(((..(((....--....-)-))..)))..((....)). ( -15.90) >DroPer_CAF1 118061 88 + 1 UAAAAGAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUGCU-UA-A-AGGAUCGAACGAUGGAGC ...............(((((.((((((.....)))))).....)))))..(((....)))....(((-(.-.-...(((....))).)))) ( -16.10) >consensus AAUAAAAAAAAAACAGGCGUACAAAUGUUAAACAUUUGCCACGAUGCCAUGACGAGAGUUGACUG__CAA_A_AGGAUCGAACCA_G__GC ...............(((((.((((((.....)))))).....)))))..(((....)))............................... (-12.20 = -12.53 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:10 2006