Locus 2622

Sequence ID 2L_DroMel_CAF1
Location 7,290,338 – 7,290,439
Length 101
Max. P 0.538817
window4178

overview

Window 8

Location 7,290,338 – 7,290,439
Length 101
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 91.47
Mean single sequence MFE -28.50
Consensus MFE -23.84
Energy contribution -23.72
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.28
Structure conservation index 0.84
SVM decision value 0.01
SVM RNA-class probability 0.538817
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7290338 101 - 22407834
----GGCAGCUACGUGAGUUUUUAGCCUACUUUAUGGGCCCCGCUCAUUGUCAGCUUCUUUUCGAUGCAGUAAUGCCAAUAGAGACUGUAGCAAUAAUAGCUAUA-
----((((..(((((((((.....(((((.....)))))...)))))).....((.((.....)).)).))).)))).........((((((.......))))))- ( -26.70)
>DroSec_CAF1 83438 102 - 1
----GGCAGCUACGUGAGUUUUUAGCCUACUUUAUGGGCCCCGCUCAUUGUCAGCUUCUUUUCGAUGCAGUAAUGCCAAUAGAGACUGUAGCAAUAAAUGCUAUAA
----((((..(((((((((.....(((((.....)))))...)))))).....((.((.....)).)).))).)))).........(((((((.....))))))). ( -28.70)
>DroSim_CAF1 90231 102 - 1
----GGCAGCUACGUGAGUUUUUAGCCUACUUUAUGGGCCCCGCUCAUUGUCAGCUUCUUUUCGAUGCAGUAAUGCCAAUAGAGACUGUAGCAAUAAUAGCUAGAA
----((((..(((((((((.....(((((.....)))))...)))))).....((.((.....)).)).))).)))).........(.((((.......)))).). ( -25.50)
>DroEre_CAF1 84911 103 - 1
CAUCGGCAGCUACGUGCGUUUUUAGCCUACUUUAUGGGC-CCGCUCAUUGUCAGCUUCUUUUCGGAGCAGUAAUGCCAAUAGAGGCUGCAGCAAAAAUAGCUAG--
.......(((((..(((.......(((((.....)))))-........((.((((((((.....(.(((....))))...)))))))))))))....)))))..-- ( -31.00)
>DroYak_CAF1 85973 100 - 1
----GGCAGCUACGUGAGUUUUUAGCCUACUUUAUGGGCCCCGCUCAUUGUCAGCUUCUUUUCGAUGCAGUAAUGCCCGUGGAGACUGUGGCAAAAAUAGCUAG--
----...((((((....)(((((.(((..((((((((((...((((((((............))))).)))...)))))))))).....)))))))))))))..-- ( -30.60)
>consensus
____GGCAGCUACGUGAGUUUUUAGCCUACUUUAUGGGCCCCGCUCAUUGUCAGCUUCUUUUCGAUGCAGUAAUGCCAAUAGAGACUGUAGCAAUAAUAGCUAGA_
....(((((((((((((((.....(((((.....)))))...))))).))).))))(((((.....(((....)))....)))))..............))).... (-23.84 = -23.72 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:09 2006