Locus 2620

Sequence ID 2L_DroMel_CAF1
Location 7,274,171 – 7,274,282
Length 111
Max. P 0.542266
window4176

overview

Window 6

Location 7,274,171 – 7,274,282
Length 111
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 87.15
Mean single sequence MFE -31.12
Consensus MFE -28.23
Energy contribution -28.47
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.30
Structure conservation index 0.91
SVM decision value 0.02
SVM RNA-class probability 0.542266
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 7274171 111 + 22407834
GGCUGCCCUGUCAGUGGGCAAAUUAAUGGUGAAGUGUAAGUAAAAUUUACGCUCUGCCACCGCAGCUGCCCCAUCCCUGCCCCAUUC-CGUAACCA-------CUUGCCACCUUGCCAC
(((......((.(((((.........((((..(((((((((...)))))))))..))))..((((...........)))).......-.....)))-------)).))......))).. ( -30.50)
>DroSec_CAF1 67267 119 + 1
GGCUGCCCUGUCAGUGGGCAAAUUAAUGGUGAAGUGUAAGUAAAAUUUACGCUCUGCCACCGCAGCUGCCCCAUCCCUGCCCCAUUCCCGUACCCACUUGCCACUUGCCACCUUGCCAC
(((......((.((((((........((((..(((((((((...)))))))))..))))..((((...........))))............)))))).)).....))).......... ( -32.50)
>DroSim_CAF1 73869 119 + 1
GGCUGCCCUGUCAGUGGGCAAAUUAAUGGUGAAGUGUAAGUAAAAUUUACGCUCUGCCACCGCAGCUGCCCCAUCCCUGCCCCAUUCCCGUACCCACUUGCCACUUGCCACCUUGCCAC
(((......((.((((((........((((..(((((((((...)))))))))..))))..((((...........))))............)))))).)).....))).......... ( -32.50)
>DroYak_CAF1 68400 97 + 1
GGCUGCCCUGUCAGUGGGCAAAUUAAUGGUGAAGUGUAAGUAAAAUUUACGCUCUGCCACCGCAGCUGCCCC----GUGCCCCAUGCCCC------------CCUUGCC------CCAC
(((......))).(.((((((.....((((..(((((((((...)))))))))..))))..(((...((...----..))....)))...------------..)))))------)).. ( -29.00)
>consensus
GGCUGCCCUGUCAGUGGGCAAAUUAAUGGUGAAGUGUAAGUAAAAUUUACGCUCUGCCACCGCAGCUGCCCCAUCCCUGCCCCAUUCCCGUACCCA______ACUUGCCACCUUGCCAC
((((((((.......)))))......((((..(((((((((...)))))))))..))))..((((...........))))..........................))).......... (-28.23 = -28.47 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:32:07 2006