Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 7,228,383 – 7,228,485 |
Length | 102 |
Max. P | 0.591779 |
Location | 7,228,383 – 7,228,485 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 82.63 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -20.51 |
Energy contribution | -20.85 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.77 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.591779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7228383 102 - 22407834 -----------GUCUUUAUAUUCCUUUAACAUAUAAUUAAUCAUAAAAUCCUGUGGAGAGCUACCAUCAAACUCCGAUGGUUCUUCAGUUGCAUUUGUUGAU------UUGAUGGUAGA -----------.((((((((....((((...............))))....)))))))).((((((((((((..(((..((.........))..)))..).)------)))))))))). ( -18.76) >DroSec_CAF1 22257 119 - 1 CUUUCCUCCACGUCUUUAAGUUCCCUUAACAUGUAAUCUAUCAUAAAUUCAUAUGGAGAGCUACCAUCAAACUGCGGUGGUUCUUCGGUUGCAUCUGUUGAUUCCGAUUCGAUGGUAGA .........((((..(((((....))))).))))..((((((((....((....(((((((((((..........)))))))))))((...((.....))...))))....)))))))) ( -30.40) >DroSim_CAF1 23461 119 - 1 CUUUCCUCCACGUCUUUAAGUUCCCUUAACAUGUAAUCUAUCAUAAAUUCAUAUGGAGAGCUACCAUCAAACUGCGGUGGUUCUUCGGUUGCAUCUGUUGAUUCCGAUUCGAUGGUAGA .........((((..(((((....))))).))))..((((((((....((....(((((((((((..........)))))))))))((...((.....))...))))....)))))))) ( -30.40) >consensus CUUUCCUCCACGUCUUUAAGUUCCCUUAACAUGUAAUCUAUCAUAAAUUCAUAUGGAGAGCUACCAUCAAACUGCGGUGGUUCUUCGGUUGCAUCUGUUGAUUCCGAUUCGAUGGUAGA ..........((((...........(((((((((((((....(((......)))(((((((((((..........))))))))))))))))))..)))))).........))))..... (-20.51 = -20.85 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:55 2006