| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 7,220,120 – 7,220,216 |
| Length | 96 |
| Max. P | 0.815581 |
| Location | 7,220,120 – 7,220,216 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 68.20 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -6.40 |
| Energy contribution | -7.84 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.28 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.815581 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 7220120 96 - 22407834 ACCUAUAUAACACUAGGUACGGAAAUAGGUAC--CGAUUGGUACUCCGCGGUAC-UUAGU----CAUCUUACCGUUAAACAGGUCGAAAACGAGUAUAACAAA ...............((((.(((..(((((((--((...((....)).))))))-)))..----..)))))))((((.((...(((....))))).))))... ( -23.20) >DroSec_CAF1 14105 88 - 1 ACCUAUAUAACACUAGGUACGGAAAUAGGUAC--CGAUUGGUGCUCCGAGGUAC-------------CUUACCGUUAAACCGGUCGAAAACGGGUAUAACACA (((((........)))))..((....((((((--(..((((....)))))))))-------------))..))((((.(((.((.....)).))).))))... ( -27.50) >DroSim_CAF1 14337 88 - 1 ACCUAUAUAACACUAGGUACGAAAAUAGGUAC--CGAUUGGUGCUCCGAGGUAC-------------CUUACCGUUAAACCGGUCGAAAACUGGUAUAACACA (((((........)))))........((((((--(..((((....)))))))))-------------))....((((.((((((.....)))))).))))... ( -27.10) >DroEre_CAF1 14658 89 - 1 ACCCCGGUAACACC----------GUAGGUACGUCAAUUGGUACUCAACAGUACAUUAGUCAAAGGCUAU----UUAAACCGGUUGGAAAAGGGUAUAAGGAA (((((((.....))----------)........((((((((((((....)))))..((((.....)))).----......)))))))....))))........ ( -19.90) >DroYak_CAF1 14506 89 - 1 ACCUAGGUAACACU----------GUACGUAC--CGGUUGGUACUUUGAAGUACAUUA--CAGACACUUUACCGUUUAACCGGUUGGAAAAGGAUAUAUCAAA .....((((...((----------...((.((--(((((((.((..((((((......--.....))))))..)))))))))))))....))....))))... ( -18.50) >consensus ACCUAUAUAACACUAGGUACG_AAAUAGGUAC__CGAUUGGUACUCCGAGGUAC_UUA_________CUUACCGUUAAACCGGUCGAAAACGGGUAUAACAAA ((((((..................))))))....((((((((.......((((................)))).....))))))))................. ( -6.40 = -7.84 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:31:51 2006